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schrodinger / pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.
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ObjectMolecule: plugin 'gro' cannot open '/home/it-admin/Desktop/pdf/md_0_10.gro' #403

Open suruchi-25 opened 1 month ago

suruchi-25 commented 1 month ago

hii everyone. while loading the .gro file the respective error accurs and i am unable to continue with my process can anyone sugest me why this error is occuring and how it can be solved

JarrettSJohnson commented 4 weeks ago

Are all gromacs files not opening, or just specific ones?

suruchi-25 commented 4 weeks ago

All the files .xtc, .gro, .tpr

On Mon, 21 Oct, 2024, 18:49 Jarrett Johnson, @.***> wrote:

Are all gromacs files not opening, or just specific ones?

— Reply to this email directly, view it on GitHub https://github.com/schrodinger/pymol-open-source/issues/403#issuecomment-2426663358, or unsubscribe https://github.com/notifications/unsubscribe-auth/BI7VTHXFFGMKOL2C5MXDHBTZ4T5PJAVCNFSM6AAAAABP2U4FPKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMRWGY3DGMZVHA . You are receiving this because you authored the thread.Message ID: @.***>

JarrettSJohnson commented 4 weeks ago

I can't seem to reproduce your issue; GROMACS files open as expected. Can you inform us which PyMOL version are you using and where are you getting it from (building from source, pymol.org, linux package manager, homebrew, etc...).

Floboysky commented 3 weeks ago

Hi guys,

I have the same problem. When I try to load .gro files, some load normally and others display the same error message...

I used the pymol_plugin_dynamics.py file.

Thanks for your answers