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schrodinger / pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.
https://pymol.org/
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map_set copy operator crash always #41

Closed giagitom closed 5 years ago

giagitom commented 5 years ago

Hi,

Doing map_set map_name, copy, my_map always crashes PyMol. Is there a bug? I am on Ubuntu using PyMol2.2

JarrettSJohnson commented 5 years ago

Hello,

Thanks for submitting an issue. I cannot reproduce on either linux or windows. Can you provide a minimum, complete example that can reproduce your bug?

Thank you.

giagitom commented 5 years ago

Hi Jarrett, try executing this lines 

fetch 1c0k, async=0
map_new map, gaussian, 4, 1c0k
map_set mapCopy, copy, map

i get Segmentation fault (core dumped)

JarrettSJohnson commented 5 years ago

Thanks. I can now reproduce the crash.

giagitom commented 5 years ago

Thanks Jarrett, now it don't crush, but if I try to load the map i attached and then copy it, it results in a messed up map.
here the map: https://www.dropbox.com/s/37abshy1w2zfbop/map_issue.ccp4?dl=0 here the same map copied: https://www.dropbox.com/s/a4g7i7o5dns1jja/map_issue_copied.ccp4?dl=0

JarrettSJohnson commented 5 years ago

Thanks! We can give it a look. In the meantime, can you open a new ticket since it's a different issue. I'm guessing not many people seem to use this functionality. :)

giagitom commented 5 years ago

Sure, thanks!