AttributeError: module 'lmfit.models' has no attribute 'COMMON_DOC'

schuetzgroup / sdt-python

Python library for fluorescence microscopy data anlysis

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AttributeError: module 'lmfit.models' has no attribute 'COMMON_DOC' #5

Closed pulga10 closed 2 years ago

pulga10 commented 2 years ago

Hi,

When calling optimize.Gaussian2DModel() im getting an error like the title says, i.e.

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/lib/python3.9/site-packages/sdt/optimize/gaussian_fit.py", line 131, in __init__
    """Constructor""" + lmfit.models.COMMON_DOC
AttributeError: module 'lmfit.models' has no attribute 'COMMON_DOC

I'm using sdt 17.1. and lmfit 1.0.3.

lschr commented 2 years ago

Thanks for the report. COMMON_DOC was removed somewhere between lmfit releases 1.0.2 and 1.0.3 (see lmfit/lmfit-py@aa0e22873ab24b6e7085f625d9c7f88c1979b8a8). I fixed sdt's usage of COMMON_DOC in 78d16996037759ac476729e95d385a2b1d2636a5. Until a new version of sdt is released, you can work around the issue by downgrading lmfit to 1.0.2.