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schulter / EMOGI

An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
GNU General Public License v3.0
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XX not found in gene list. Skipping #10

Open dandan307 opened 1 year ago

dandan307 commented 1 year ago

I run the LPR script for computing the contributions of my interested genes. But the error was prompted " 'KMT2D' not found in gene list. Skipping". my code is: python lrp.py -m ./EMOGI/exist_model/EMOGI_STRINGdb -g KMT2D -b False What is the cause of this?

xluuuuu commented 11 months ago

Hi, have the same issue, did you figure it out? thanks!

dandan307 commented 11 months ago

Hi, have the same issue, did you figure it out? thanks!

No, not yet.

xluuuuu commented 11 months ago

I figured it out. Need to change the code when reading h5 file. Using decode(‘utf-8’) for gene name and feature name. Hope it helps.