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schulter / EMOGI

An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
GNU General Public License v3.0
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lacking a defined variable 'blca_df_reindexed' in preprocess_cnas.ipynb #5

Open Ringoio opened 2 years ago

Ringoio commented 2 years ago

Hiii ：) When I ran this code, this was a problem that held me back. In notebook preprocess_cnas.ipynb, there is one column says: cna_blca_matrix = cna_sample_matrix.loc[:, cna_sample_matrix.columns.isin(blca_df_reindexed.columns)] But it turns out that name 'blca_df_reindexed' is not defined. So what is 'blca_df_reindexed'? Looking forward to your reply! Thank!