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schultzelab / swarm_learning

Scripts for figures and calculations of the manuscript by Warnat-Herresthal el al. 2020
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Detailed steps of Preprocessing #1

Open jian1299 opened 3 years ago

jian1299 commented 3 years ago

Excuse me, can you describe in detail "Place your fastq-files in the fastq subfolder. The Snakefile expects the following filename structure: {sample}_S{sid}_L{lane}R{read}{num}.fastq.gz"

SHerresthal commented 2 years ago

Hi, I do not really get the context of your question. Please provide some more details. Are you getting an error while preprocessing FASTQ files?