schwilklab / understory-ma

Metanalysis project effects of thinning and burning on understory vegetation
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Schwilk refactor #9

Closed dschwilk closed 9 years ago

dschwilk commented 10 years ago

@jwillms: I reorganized, replaced data with what I think was udpated date and reran the analyses. Please run them yourself to create the plots, but the conf interval file is in the repo. Please check that these are the current data and check those results. If all is correct that paper should match these but I think only you know what version is correct. I did fairly atomic commits so it should be sinple to check each one.

dschwilk commented 10 years ago

Also, since Pat and Anne work in ms word, just send me the ms word version of the ms as well once you get comments and I will edit and comment in that. We can then just keep that word document as the ms.

patkgrn4run commented 10 years ago

Hello Everyone: I am back from travelling and can now work on this manuscript. I wasn’t able to carve out any time to look at it while on the raod unfortunately. I would like to make sure that I am reviewing the most current version – so have Dylan or Anne returned any comments to Jason?

Thanks for the update. pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Friday, September 12, 2014 9:40 PM To: schwilklab/understory-ma Subject: Re: [understory-ma] Schwilk refactor (#9)

Also, since Pat and Anne work in ms word, just send me the ms word version of the ms as well once you get comments and I will edit and comment in that. We can then just keep that word document as the ms.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55481690.

dschwilk commented 10 years ago

Hi Pat,

I believe you have the current draft.

No, I haven't made edits on the ms itself because we will switch to ms word for that and Josh didn't send an ms word version to me. I should get it from him rather than convert myself. I have cleaned up the data and code. Josh has a ton of good organized information but there were a few bugs in the analysis. He and I need to sit down and double check a few things. I doubt numbers will change very much, but I want to make sure they are fully correct. Good news is we have a good record of everything and it is all scripted, so easy enough to modify and rerun in response to review!

-Dylan

On 09/17/2014 11:00 AM, patkgrn4run wrote:

Hello Everyone: I am back from travelling and can now work on this manuscript. I wasn’t able to carve out any time to look at it while on the raod unfortunately. I would like to make sure that I am reviewing the most current version – so have Dylan or Anne returned any comments to Jason?

Thanks for the update. pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Friday, September 12, 2014 9:40 PM To: schwilklab/understory-ma Subject: Re: [understory-ma] Schwilk refactor (#9)

Also, since Pat and Anne work in ms word, just send me the ms word version of the ms as well once you get comments and I will edit and comment in that. We can then just keep that word document as the ms.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55481690.

— Reply to this email directly or view it on GitHub https://github.com/schwilklab/understory-ma/pull/9#issuecomment-55916375.

patkgrn4run commented 10 years ago

So should I edit the ms even though the numbers maybe wrong? pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Wednesday, September 17, 2014 10:53 AM To: schwilklab/understory-ma Cc: Kennedy, Pat Subject: Re: [understory-ma] Schwilk refactor (#9)

Hi Pat,

I believe you have the current draft.

No, I haven't made edits on the ms itself because we will switch to ms word for that and Josh didn't send an ms word version to me. I should get it from him rather than convert myself. I have cleaned up the data and code. Josh has a ton of good organized information but there were a few bugs in the analysis. He and I need to sit down and double check a few things. I doubt numbers will change very much, but I want to make sure they are fully correct. Good news is we have a good record of everything and it is all scripted, so easy enough to modify and rerun in response to review!

-Dylan

On 09/17/2014 11:00 AM, patkgrn4run wrote:

Hello Everyone: I am back from travelling and can now work on this manuscript. I wasn’t able to carve out any time to look at it while on the raod unfortunately. I would like to make sure that I am reviewing the most current version – so have Dylan or Anne returned any comments to Jason?

Thanks for the update. pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Friday, September 12, 2014 9:40 PM To: schwilklab/understory-ma Subject: Re: [understory-ma] Schwilk refactor (#9)

Also, since Pat and Anne work in ms word, just send me the ms word version of the ms as well once you get comments and I will edit and comment in that. We can then just keep that word document as the ms.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55481690.

— Reply to this email directly or view it on GitHub https://github.com/schwilklab/understory-ma/pull/9#issuecomment-55916375.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55933237.

dschwilk commented 10 years ago

I say yes.

On 09/17/2014 01:19 PM, patkgrn4run wrote:

So should I edit the ms even though the numbers maybe wrong? pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Wednesday, September 17, 2014 10:53 AM To: schwilklab/understory-ma Cc: Kennedy, Pat Subject: Re: [understory-ma] Schwilk refactor (#9)

Hi Pat,

I believe you have the current draft.

No, I haven't made edits on the ms itself because we will switch to ms word for that and Josh didn't send an ms word version to me. I should get it from him rather than convert myself. I have cleaned up the data and code. Josh has a ton of good organized information but there were a few bugs in the analysis. He and I need to sit down and double check a few things. I doubt numbers will change very much, but I want to make sure they are fully correct. Good news is we have a good record of everything and it is all scripted, so easy enough to modify and rerun in response to review!

-Dylan

On 09/17/2014 11:00 AM, patkgrn4run wrote:

Hello Everyone: I am back from travelling and can now work on this manuscript. I wasn’t able to carve out any time to look at it while on the raod unfortunately. I would like to make sure that I am reviewing the most current version – so have Dylan or Anne returned any comments to Jason?

Thanks for the update. pat

Patricia L. Kennedy, Professor Eastern Oregon Agriculture & Natural Resource Program & Department of Fisheries and Wildlife Oregon State University Union Experiment Station P.O Box E Union, OR 97883, USA (541)562-5129 X 31

“All of humanity’s problems stem from man’s inability to sit quietly in a room alone.” Blaise Pascal

From: Dylan Schwilk [mailto:notifications@github.com] Sent: Friday, September 12, 2014 9:40 PM To: schwilklab/understory-ma Subject: Re: [understory-ma] Schwilk refactor (#9)

Also, since Pat and Anne work in ms word, just send me the ms word version of the ms as well once you get comments and I will edit and comment in that. We can then just keep that word document as the ms.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55481690.

— Reply to this email directly or view it on GitHub https://github.com/schwilklab/understory-ma/pull/9#issuecomment-55916375.

— Reply to this email directly or view it on GitHubhttps://github.com/schwilklab/understory-ma/pull/9#issuecomment-55933237.

— Reply to this email directly or view it on GitHub https://github.com/schwilklab/understory-ma/pull/9#issuecomment-55937189.