Prepare for proofreading effort

constantinpape commented 4 years ago

A few things we should do to prepare for the proofreading effort:

[ ] Make a separate repository for this based on the napari plugin cookiecutter; move our napari protoype there.
[ ] Make a list of images for proofreading; the list by Lorenzo is a good starting point, but we should also include images from the new microscope set-up.
[ ] Figure out which output format we need for the EMBL App (I am talking about this with EMBL IT).
[ ] Think about the functionality to correct the segmentation and how it interacts with the infected cell labeling.
[ ] Make first draft for the user tutorial; recruit some beta testers (@akreshuk, @metavibor, Severina).

cc @wolny @lorenzocerrone @akreshuk

constantinpape commented 4 years ago

I have made a repo and added the data generated by the cookiecutter: https://github.com/hci-unihd/covid-if-annotations

constantinpape commented 4 years ago

Closing this, all the discussions about this are moved to the other repo.

sciai-lab / batchlib