scidash / neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit
http://neuronunit.scidash.org
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Optimizing Izhikitich model to fit CA1 and DG basket cell dynamics. #159

Closed russelljjarvis closed 6 years ago

russelljjarvis commented 6 years ago

NeuroLEX and neuroelectro have references to CA1 and DG basket electro-physiology properties fi_basket = {'nlex_id':'NLXCELL:100201'}

I want to create a NeuronUnit test suite based on this neuron or similar, however I can't find a basket cell in the Allen Brain Atlas cell types, that has an ephys value.

Can I just initialize the neuronunit test suite using a neuroelectro observation instead of an Allen Brain Observation?

    tests += [fi.RheobaseTestP(observation=observation)]
    test_class_params = [(passive.InputResistanceTest,None),
                     (passive.TimeConstantTest,None),
                     (passive.CapacitanceTest,None),
                     (passive.RestingPotentialTest,None),
                     (waveform.InjectedCurrentAPWidthTest,None),
                     (waveform.InjectedCurrentAPAmplitudeTest,None),
                     (waveform.InjectedCurrentAPThresholdTest,None)]#,
                     #q(fi.RheobaseTestP,None)]
russelljjarvis commented 6 years ago

Moving this issue to a more appropriate home.

https://github.com/russelljjarvis/DataAnalysisComputationNeuroscience/issues/2