scidash / neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit
http://neuronunit.scidash.org
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Remade for access to scidash travis #258

Closed russelljjarvis closed 3 years ago

russelljjarvis commented 3 years ago

Remade for access to scidash travis

review-notebook-app[bot] commented 3 years ago

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russelljjarvis commented 3 years ago

@rgerkin ➜ neuronunit git:(optimization) ✗ coverage report Name Stmts Miss Cover

benchmarks/init.py 0 0 100% benchmarks/benchmarks.py 10 10 0% neuronunit/init.py 12 3 75% neuronunit/aibs.py 58 37 36% neuronunit/allenapi/init.py 1 0 100% neuronunit/allenapi/aibs.py 132 87 34% neuronunit/allenapi/allen_data_driven.py 278 78 72% neuronunit/allenapi/allen_data_efel_features_opt.py 191 50 74% neuronunit/allenapi/make_allen_tests.py 44 30 32% neuronunit/allenapi/make_allen_tests_from_id.py 215 136 37% neuronunit/allenapi/neuroelectroapi.py 314 270 14% neuronunit/allenapi/other_feature_extraction.py 221 203 8% neuronunit/allenapi/utils.py 215 183 15% neuronunit/bbp.py 80 13 84% neuronunit/capabilities/init.py 62 20 68% neuronunit/capabilities/channel.py 11 0 100% neuronunit/capabilities/morphology.py 5 0 100% neuronunit/capabilities/spike_functions.py 86 36 58% neuronunit/cellmodelp.py 782 698 11% neuronunit/models/init.py 9 2 78% neuronunit/models/backends/init.py 43 10 77% neuronunit/models/backends/base.py 20 0 100% neuronunit/models/backends/general_pyNN.py 99 70 29% neuronunit/models/backends/geppetto.py 8 1 88% neuronunit/models/backends/glif.py 140 106 24% neuronunit/models/backends/hhrawf.py 112 84 25% neuronunit/models/backends/jNeuroML.py 40 23 42% neuronunit/models/backends/neuron.py 195 164 16% neuronunit/models/backends/parse_glif.py 51 45 12% neuronunit/models/backends/rawpy.py 86 64 26% neuronunit/models/backends/static.py 6 2 67% neuronunit/models/channel.py 39 26 33% neuronunit/models/lems.py 151 109 28% neuronunit/models/morphology.py 12 5 58% neuronunit/models/optimization_model_layer.py 158 119 25% neuronunit/models/reduced.py 62 37 40% neuronunit/models/static.py 49 16 67% neuronunit/models/very_reduced.py 31 19 39% neuronunit/models/very_reduced_sans_lems.py 32 17 47% neuronunit/neuroconstruct/init.py 11 11 0% neuronunit/neuroconstruct/capabilities.py 0 0 100% neuronunit/neuroconstruct/models.py 133 133 0% neuronunit/neuroelectro.py 260 147 43% neuronunit/neuromldb.py 103 0 100% neuronunit/optimization/init.py 0 0 100% neuronunit/optimization/algorithms.py 147 45 69% neuronunit/optimization/data_transport_container_orig.py 196 172 12% neuronunit/optimization/model_parameters.py 90 2 98% neuronunit/optimization/neuronunit_to_bpo.py 10 5 50% neuronunit/optimization/optimization_management.py 604 248 59% neuronunit/optimization/stoppingCriteria.py 20 12 40% neuronunit/plottools.py 813 771 5% neuronunit/tests/init.py 18 7 61% neuronunit/tests/base.py 114 63 45% neuronunit/tests/channel.py 102 72 29% neuronunit/tests/druckmann2013.py 639 64 90% neuronunit/tests/dynamics.py 226 100 56% neuronunit/tests/fi.py 312 172 45% neuronunit/tests/make_allen_tests.py 21 0 100% neuronunit/tests/morphology.py 248 45 82% neuronunit/tests/passive.py 154 11 93% neuronunit/tests/target_spike_current.py 272 128 53% neuronunit/tests/waveform.py 84 37 56%

TOTAL 8637 5018 42%