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scidash / neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit
http://neuronunit.scidash.org
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Testing of ion channel models from Podlaski et al #54

Open rgerkin opened 7 years ago

rgerkin commented 7 years ago

This paper has a pipeline for comparing ion channel models to each other and to experimental data. Can this pipeline be wrapped in or refactored to use NeuronUnit?

russelljjarvis commented 7 years ago

Yes I looked through the paper, but I couldn't find any associated github repositories. When I really want to find the code that was used to build a paper, I often google search 'authors name, github'. I might do that later.

rgerkin commented 7 years ago

The API is detailed here. We can use this to programmatically get traces used to define tests for ion channels.