scikit-bio scikit-bio-cookbook issues

scikit-bio / scikit-bio-cookbook

Recipes for bioinformatics analyses with scikit-bio

Other

39 stars 22 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Travis Fix?

#70 ebolyen closed 8 years ago
2
CI: travis x server fix for ete3

#69 jairideout closed 8 years ago
1
MAINT: minor fixes to region-specific ref collection recipe

#68 jairideout closed 8 years ago
0
Update dependencies

#67 ebolyen closed 8 years ago
0
ENH: fixes #48, updates for 0.5.0

#66 gregcaporaso closed 8 years ago
0
ENH: update remaining recipes to scikit-bio 0.5.0

#65 jairideout closed 8 years ago
0
Update for 0.5.0 for `Finding PCR primers in sequencing products.ipynb`

#64 ebolyen closed 8 years ago
0
Update for 0.5.0 for `Finding the longest stretch of specific characters in a DNA sequence.ipynb`

#63 ebolyen closed 8 years ago
0
Update for 0.5.0 for `Phylogenetic diversity calculations.ipynb`

#62 ebolyen closed 8 years ago
0
Update for 0.5.0 for `Progressive multiple sequence alignment.ipynb`

#61 ebolyen closed 8 years ago
0
Update for 0.5.0 for ` Reading and writing files.ipynb`

#60 ebolyen closed 8 years ago
0
Update for 0.5.0 for `Six-frame translation of NucleotideSequences.ipynb`

#59 ebolyen closed 8 years ago
0
Update for 0.5.0 for `Using the workflow to automate remote database queries.ipynb`

#58 ebolyen closed 8 years ago
0
Broken Link in Alignments and phylogenetic reconstruction.ipynb

#57 gblanchard4 closed 8 years ago
8
Cookbook is in python 2?

#56 jwdebelius closed 8 years ago
2
add new sequence classifier recipe

#55 gregcaporaso closed 8 years ago
4
Scipy demo. makes extensive use of skbio sequence object

#54 johnchase closed 9 years ago
1
040 updates

#53 gregcaporaso closed 9 years ago
0
CI: attempt to fix travis build

#52 jairideout closed 9 years ago
0
BUG: fixed variable name typos

#51 williamrowell closed 9 years ago
4
Phylogenetic diversity calculations.ipynb is out of date

#50 anderspitman closed 8 years ago
1
WIP: Workflow recipe

#49 wasade closed 9 years ago
20
incorrect result in "Creating a region-specific reference collection from full-length reference sequences"

#48 gregcaporaso closed 8 years ago
0
Add exploring microbial diversity recipe link to Index.ipynb

#47 jairideout closed 9 years ago
0
exploring microbial diversity recipe isn't linked in Index.ipynb

#46 jairideout closed 9 years ago
0
Recipe is excepting

#45 wasade closed 8 years ago
10
recipe for visualizing within vs between distances

#44 jairideout opened 9 years ago
2
recipe illustrating visualizing a BIOM table with seaborn heatmaps

#43 gregcaporaso opened 9 years ago
1
updated notebook titles and auto-generated the TOC

#42 gregcaporaso closed 9 years ago
4
BUG: fixed parameter that was being ignored

#41 gregcaporaso closed 9 years ago
0
Add 88 Soils beta diversity recipe

#40 jairideout closed 9 years ago
8
add recipe for skbio.workflow

#39 jairideout closed 8 years ago
1
Add index link to new I/O recipe

#38 jairideout closed 9 years ago
0
add i/o recipe to Index.ipynb

#37 gregcaporaso closed 9 years ago
1
Add I/O recipe

#36 jairideout closed 9 years ago
7
Update recipes to use scikit-bio 0.2.1

#35 jairideout closed 9 years ago
3
Update Archeoptryx visualizations in `alignments-and-phylogenetic-reconstruction.ipynb`

#34 ebolyen closed 8 years ago
1
added recipe on computing phylogenetic diversity metrics

#33 gregcaporaso closed 9 years ago
1
add recipe showing PD and UniFrac calculations

#32 gregcaporaso closed 9 years ago
1
new recipe of the week

#31 gregcaporaso closed 9 years ago
1
Add six-frame translation recipe

#30 jairideout closed 9 years ago
2
add recipe showing how to perform six frame translation

#29 jairideout closed 9 years ago
3
add recipe showing how to perform I/O in scikit-bio

#28 jairideout closed 9 years ago
0
create recipe illustrating the use of trie to collapse sequences which are subsequences of others

#27 gregcaporaso opened 9 years ago
0
new recipe of the week

#26 gregcaporaso closed 9 years ago
0
add alignment viewing and filtering recipe

#25 gregcaporaso closed 9 years ago
1
fixed #23

#24 gregcaporaso closed 9 years ago
0
fix broken print statements

#23 gregcaporaso closed 9 years ago
0
ENH: first steps toward addressing #21

#22 gregcaporaso closed 9 years ago
0
new recipe illustrating phylogenetic reconstruction with neighbor-joining followed by outgroup rooting

#21 gregcaporaso closed 9 years ago
5