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scikit-bio
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scikit-bio-cookbook
Recipes for bioinformatics analyses with scikit-bio
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Travis Fix?
#70
ebolyen
closed
8 years ago
2
CI: travis x server fix for ete3
#69
jairideout
closed
8 years ago
1
MAINT: minor fixes to region-specific ref collection recipe
#68
jairideout
closed
8 years ago
0
Update dependencies
#67
ebolyen
closed
8 years ago
0
ENH: fixes #48, updates for 0.5.0
#66
gregcaporaso
closed
8 years ago
0
ENH: update remaining recipes to scikit-bio 0.5.0
#65
jairideout
closed
8 years ago
0
Update for 0.5.0 for `Finding PCR primers in sequencing products.ipynb`
#64
ebolyen
closed
8 years ago
0
Update for 0.5.0 for `Finding the longest stretch of specific characters in a DNA sequence.ipynb`
#63
ebolyen
closed
8 years ago
0
Update for 0.5.0 for `Phylogenetic diversity calculations.ipynb`
#62
ebolyen
closed
8 years ago
0
Update for 0.5.0 for `Progressive multiple sequence alignment.ipynb`
#61
ebolyen
closed
8 years ago
0
Update for 0.5.0 for ` Reading and writing files.ipynb`
#60
ebolyen
closed
8 years ago
0
Update for 0.5.0 for `Six-frame translation of NucleotideSequences.ipynb`
#59
ebolyen
closed
8 years ago
0
Update for 0.5.0 for `Using the workflow to automate remote database queries.ipynb`
#58
ebolyen
closed
8 years ago
0
Broken Link in Alignments and phylogenetic reconstruction.ipynb
#57
gblanchard4
closed
8 years ago
8
Cookbook is in python 2?
#56
jwdebelius
closed
8 years ago
2
add new sequence classifier recipe
#55
gregcaporaso
closed
8 years ago
4
Scipy demo. makes extensive use of skbio sequence object
#54
johnchase
closed
9 years ago
1
040 updates
#53
gregcaporaso
closed
9 years ago
0
CI: attempt to fix travis build
#52
jairideout
closed
9 years ago
0
BUG: fixed variable name typos
#51
williamrowell
closed
9 years ago
4
Phylogenetic diversity calculations.ipynb is out of date
#50
anderspitman
closed
8 years ago
1
WIP: Workflow recipe
#49
wasade
closed
9 years ago
20
incorrect result in "Creating a region-specific reference collection from full-length reference sequences"
#48
gregcaporaso
closed
8 years ago
0
Add exploring microbial diversity recipe link to Index.ipynb
#47
jairideout
closed
9 years ago
0
exploring microbial diversity recipe isn't linked in Index.ipynb
#46
jairideout
closed
9 years ago
0
Recipe is excepting
#45
wasade
closed
8 years ago
10
recipe for visualizing within vs between distances
#44
jairideout
opened
9 years ago
2
recipe illustrating visualizing a BIOM table with seaborn heatmaps
#43
gregcaporaso
opened
9 years ago
1
updated notebook titles and auto-generated the TOC
#42
gregcaporaso
closed
9 years ago
4
BUG: fixed parameter that was being ignored
#41
gregcaporaso
closed
9 years ago
0
Add 88 Soils beta diversity recipe
#40
jairideout
closed
9 years ago
8
add recipe for skbio.workflow
#39
jairideout
closed
8 years ago
1
Add index link to new I/O recipe
#38
jairideout
closed
9 years ago
0
add i/o recipe to Index.ipynb
#37
gregcaporaso
closed
9 years ago
1
Add I/O recipe
#36
jairideout
closed
9 years ago
7
Update recipes to use scikit-bio 0.2.1
#35
jairideout
closed
9 years ago
3
Update Archeoptryx visualizations in `alignments-and-phylogenetic-reconstruction.ipynb`
#34
ebolyen
closed
8 years ago
1
added recipe on computing phylogenetic diversity metrics
#33
gregcaporaso
closed
9 years ago
1
add recipe showing PD and UniFrac calculations
#32
gregcaporaso
closed
9 years ago
1
new recipe of the week
#31
gregcaporaso
closed
9 years ago
1
Add six-frame translation recipe
#30
jairideout
closed
9 years ago
2
add recipe showing how to perform six frame translation
#29
jairideout
closed
9 years ago
3
add recipe showing how to perform I/O in scikit-bio
#28
jairideout
closed
9 years ago
0
create recipe illustrating the use of trie to collapse sequences which are subsequences of others
#27
gregcaporaso
opened
9 years ago
0
new recipe of the week
#26
gregcaporaso
closed
9 years ago
0
add alignment viewing and filtering recipe
#25
gregcaporaso
closed
9 years ago
1
fixed #23
#24
gregcaporaso
closed
9 years ago
0
fix broken print statements
#23
gregcaporaso
closed
9 years ago
0
ENH: first steps toward addressing #21
#22
gregcaporaso
closed
9 years ago
0
new recipe illustrating phylogenetic reconstruction with neighbor-joining followed by outgroup rooting
#21
gregcaporaso
closed
9 years ago
5
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