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scikit-bio / scikit-bio-cookbook

Recipes for bioinformatics analyses with scikit-bio
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new recipe illustrating power analysis (possibly with microbiome data) #20

Open gregcaporaso opened 9 years ago

gregcaporaso commented 9 years ago

Depends on skbio's #636.

jwdebelius commented 9 years ago

I'd like to work on something like this.

Could this also document how to use statsmodels.stats.power to extrapolate the curves, since I consider that a really important functionality but couldn't incorporate it in skbio because of the dependency?

gregcaporaso commented 9 years ago

That sounds really cool, I'd love to see that. Can I sign you up for writing one of these sometime within the next 10 weeks for the recipe of the week series http://microbe.net/2014/09/23/announcing-the-scikit-bio-cookbook-recipe-of-the-week-series/? The only catch is that this code would need to make it into an skbio release first, so would likely need to be late in the series.

On Wed, Sep 24, 2014 at 12:12 AM, J W Debelius notifications@github.com wrote:

I'd like to work on something like this.

Could this also document how to use statsmodels.stats.power to extrapolate the curves, since I consider that a really important functionality but couldn't incorporate it in skbio because of the dependency?

Reply to this email directly or view it on GitHub https://github.com/biocore/scikit-bio-cookbook/issues/20#issuecomment-56632958 .

jwdebelius commented 9 years ago

Yes. I'd be happy to do it. Are there a set of datasets people are already working with as examples?

rob-knight commented 9 years ago

antonio should have for evident

On Sep 24, 2014, at 1:08 PM, J W Debelius notifications@github.com<mailto:notifications@github.com> wrote:

Yes. I'd be happy to do it. Are there a set of datasets people are already working with as examples?

— Reply to this email directly or view it on GitHubhttps://github.com/biocore/scikit-bio-cookbook/issues/20#issuecomment-56722238.

antgonza commented 9 years ago

Yup, here: https://github.com/biocore/Evident/tree/master/data, let me know if you have any questions.