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scikit-hep / fastjet

Jet-finding in the Scikit-HEP ecosystem.
https://fastjet.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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CGAL explicitly requested and not found or not functional #193

Open MycrofD opened 1 year ago

MycrofD commented 1 year ago

Trying to pip install fastjet on Mac M2, but getting errors like CGAL not found.

      checking CGAL_MAKEFILE... not specified
      checking whether C++ compiler accepts -frounding-math -Werror... no
      checking whether C++ compiler accepts -fp-model strict -Werror... no
      checking CGAL in /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-ksirtcyh/fastjet_17e125686bd34276b7e8111b11946b01/CGAL-5.5.1... lib
      checking for gmp.h... no
      checking for main in -lgmp... no
      configure: error: CGAL explicitly requested and not found or not functional
      This file contains any messages produced by compilers while
      running configure, to aid debugging if configure makes a mistake.

      It was created by FastJet configure 3.4.0, which was
      generated by GNU Autoconf 2.71.  Invocation command line was

Steps taken:

  1. brew install cgal. This installs CGAL 5.5.2.
  2. But fastjet/setup.py:CGAL_ZIP made me think I might need CGAL 5.5.1. So, I tried installing that.
  3. Also tried pip install --upgrade pip wheel
  4. Pyjet seems to install fine without any issue even if it requires brew install cgal gmp wget.

But so far nothing helped. Any ideas?

chrispap95 commented 1 year ago

Unfortunately, we don't have binaries for Apple silicon yet which means that fastjet has to be compiled by pip locally. pyjet doesn't compile the C++ FastJet library so it doesn't suffer from these failure cases. I don't have an M1 or M2 machine so I can't offer a lot of help but I believe some of the other devs have machines with Apple silicon so I think it is possible to install fastjet on them. The CGAL that is used here is within the container that pip is creating and, therefore, has nothing to do with what you have in your system. Is this the full error message? In theory, it should have a more detailed printout below. Can you post all of it?

MycrofD commented 1 year ago

The error message is more than 1300 lines. Here it is.

Error log: ``` ✦ ❯ pip install fastjet Collecting fastjet Using cached fastjet-3.4.0.5.tar.gz (4.0 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: numpy>=1.13.3 in ./.direnv/python-3.10.6/lib/python3.10/site-packages (from fastjet) (1.24.2) Collecting awkward>=2 Using cached awkward-2.1.2-py3-none-any.whl (596 kB) Collecting vector Using cached vector-1.0.0-py3-none-any.whl (170 kB) Collecting typing-extensions>=4.1.0 Using cached typing_extensions-4.5.0-py3-none-any.whl (27 kB) Collecting awkward-cpp==13 Using cached awkward_cpp-13-cp310-cp310-macosx_10_9_universal2.whl (1.8 MB) Collecting packaging Using cached packaging-23.0-py3-none-any.whl (42 kB) Building wheels for collected packages: fastjet Building wheel for fastjet (pyproject.toml) ... error error: subprocess-exited-with-error × Building wheel for fastjet (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [1333 lines of output] /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running bdist_wheel running build running build_py creating build creating build/lib.macosx-12.6-arm64-cpython-310 creating build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/version.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/_singleevent.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/__init__.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/_pyjet.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/_multievent.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/_generalevent.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet copying src/fastjet/_utils.py -> build/lib.macosx-12.6-arm64-cpython-310/fastjet running egg_info writing src/fastjet.egg-info/PKG-INFO writing dependency_links to src/fastjet.egg-info/dependency_links.txt writing requirements to src/fastjet.egg-info/requires.txt writing top-level names to src/fastjet.egg-info/top_level.txt listing git files failed - pretending there aren't any reading manifest file 'src/fastjet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '.gitmodules' found anywhere in distribution warning: no previously-included files found matching '.cirrus.yml' adding license file 'LICENSE' writing manifest file 'src/fastjet.egg-info/SOURCES.txt' running build_ext patching file pyinterface/fastjet.i patching file src/ClusterSequence.cc Hunk #1 succeeded at 1017 with fuzz 1. ./autogen.sh: line 34: [: too many arguments processing . Running libtoolize... glibtoolize: putting auxiliary files in '.'. glibtoolize: copying file './ltmain.sh' glibtoolize: putting macros in 'm4'. glibtoolize: copying file 'm4/libtool.m4' glibtoolize: copying file 'm4/ltoptions.m4' glibtoolize: copying file 'm4/ltsugar.m4' glibtoolize: copying file 'm4/ltversion.m4' glibtoolize: copying file 'm4/lt~obsolete.m4' glibtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, glibtoolize: and rerunning glibtoolize and aclocal. Running aclocal -I m4 ... Running automake --gnu ... configure.ac:50: installing './compile' configure.ac:491: installing './config.guess' configure.ac:491: installing './config.sub' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' parallel-tests: installing './test-driver' example/Makefile.am: installing './depcomp' pyinterface/Makefile.am:82: warning: eval AM_LIBTOOLFLAGS = "--silent": non-POSIX variable name pyinterface/Makefile.am:82: (probably a GNU make extension) pyinterface/Makefile.am:87: warning: eval AM_LIBTOOLFLAGS = "": non-POSIX variable name pyinterface/Makefile.am:87: (probably a GNU make extension) pyinterface/Makefile.am:67: installing './py-compile' Running autoconf ... configure.ac:88: warning: The macro `AC_STDC_HEADERS' is obsolete. configure.ac:88: You should run autoupdate. ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:88: the top level configure.ac:88: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:88: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:88: the top level configure.ac:303: warning: The macro `AM_ENABLE_SHARED' is obsolete. configure.ac:303: You should run autoupdate. m4/ltoptions.m4:205: AM_ENABLE_SHARED is expanded from... configure.ac:303: the top level configure.ac:342: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:342: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from... m4/CGAL.m4:15: ACX_CHECK_CGAL is expanded from... configure.ac:342: the top level configure.ac:342: warning: The macro `AC_ERROR' is obsolete. configure.ac:342: You should run autoupdate. ./lib/autoconf/oldnames.m4:34: AC_ERROR is expanded from... m4/CGAL.m4:15: ACX_CHECK_CGAL is expanded from... configure.ac:342: the top level configure.ac:491: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:491: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:491: the top level configure.ac:647: warning: The macro `SWIG_ENABLE_CXX' is obsolete. configure.ac:647: You should run autoupdate. m4/ax_swig_enable_cxx.m4:48: SWIG_ENABLE_CXX is expanded from... configure.ac:647: the top level configure.ac:648: warning: The macro `SWIG_PYTHON' is obsolete. configure.ac:648: You should run autoupdate. m4/ax_swig_python.m4:57: SWIG_PYTHON is expanded from... configure.ac:648: the top level processing ./plugins/SISCone/siscone Running libtoolize... glibtoolize: putting auxiliary files in '.'. glibtoolize: copying file './ltmain.sh' glibtoolize: putting macros in 'm4'. glibtoolize: copying file 'm4/libtool.m4' glibtoolize: copying file 'm4/ltoptions.m4' glibtoolize: copying file 'm4/ltsugar.m4' glibtoolize: copying file 'm4/ltversion.m4' glibtoolize: copying file 'm4/lt~obsolete.m4' glibtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, glibtoolize: and rerunning glibtoolize and aclocal. Running aclocal -I m4 ... Running automake --gnu ... configure.ac:21: installing './compile' configure.ac:73: installing './config.guess' configure.ac:73: installing './config.sub' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' examples/Makefile.am: installing './depcomp' Running autoconf ... configure.ac:36: warning: The macro `AC_STDC_HEADERS' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:36: the top level configure.ac:36: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:36: the top level configure.ac:73: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:98: warning: AC_OUTPUT should be used without arguments. configure.ac:98: You should run autoupdate. Running ./configure --prefix=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/src/fastjet/_fastjet_core --disable-auto-ptr --enable-allcxxplugins --enable-cgal-header-only --enable-cgal --with-cgaldir=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1 --enable-swig --enable-pyext LDFLAGS=-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN ... checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '65698565' is supported by ustar format... no checking whether GID '1527229786' is supported by ustar format... no checking how to create a ustar tar archive... none checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for int... yes checking for long... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... gcc3 checking for g++... yes checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether make sets $(MAKE)... (cached) yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking if g++ supports -Woverloaded-virtual flag... yes checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "[[deprecated]]" keyword... yes checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "__attribute__((deprecated))" keyword... yes checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "override" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "[[deprecated]]" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "__attribute__((deprecated))" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "override" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "explicit" keyword for operators... no checking for execinfo.h... yes checking for cos in -lm... yes checking CGAL_MAKEFILE... not specified checking whether C++ compiler accepts -frounding-math -Werror... no checking whether C++ compiler accepts -fp-model strict -Werror... no checking CGAL in /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1... lib checking for gmp.h... no checking for main in -lgmp... no configure: error: CGAL explicitly requested and not found or not functional This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by FastJet configure 3.4.0, which was generated by GNU Autoconf 2.71. Invocation command line was $ ./configure --prefix=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/src/fastjet/_fastjet_core --disable-auto-ptr --enable-allcxxplugins --enable-cgal-header-only --enable-cgal --with-cgaldir=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1 --enable-swig --enable-pyext 'LDFLAGS=-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN' ## --------- ## ## Platform. ## ## --------- ## hostname = xxxhome uname -m = arm64 uname -r = 21.6.0 uname -s = Darwin uname -v = Darwin Kernel Version 21.6.0: Mon Dec 19 20:45:43 PST 2022; root:xnu-8020.240.18~2/RELEASE_ARM64_T8110 /usr/bin/uname -p = arm /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 21.6.0: Mon Dec 19 20:45:43 PST 2022; root:xnu-8020.240.18~2/RELEASE_ARM64_T8110 Kernel configured for up to 8 processors. 8 processors are physically available. 8 processors are logically available. Processor type: arm64e (ARM64E) Processors active: 0 1 2 3 4 5 6 7 Primary memory available: 24.00 gigabytes Default processor set: 605 tasks, 4660 threads, 8 processors Load average: 2.80, Mach factor: 5.19 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/bin/ PATH: /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/normal/bin/ PATH: /Users/username/dev/.direnv/python-3.10.6/bin/ PATH: /opt/homebrew/opt/ PATH: /opt/homebrew/opt/qt@5/bin/ PATH: /opt/homebrew/opt/imagemagick@6/bin/ PATH: /Users/username/.pyenv/shims/ PATH: /usr/local/bin/charm/ PATH: /usr/local/sbin/ PATH: /opt/homebrew/bin/ PATH: /opt/homebrew/sbin/ PATH: /opt/homebrew/share/google-cloud-sdk/bin/ PATH: /usr/local/bin/ PATH: /usr/bin/ PATH: /bin/ PATH: /usr/sbin/ PATH: /sbin/ PATH: /Library/TeX/texbin/ PATH: /Users/username/.local/bin/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:3037: looking for aux files: config.guess config.sub ltmain.sh compile missing install-sh configure:3050: trying ./ configure:3079: ./config.guess found configure:3079: ./config.sub found configure:3079: ./ltmain.sh found configure:3079: ./compile found configure:3079: ./missing found configure:3061: ./install-sh found configure:3209: checking for a BSD-compatible install configure:3282: result: /usr/bin/install -c configure:3293: checking whether build environment is sane configure:3348: result: yes configure:3507: checking for a race-free mkdir -p configure:3551: result: ./install-sh -c -d configure:3558: checking for gawk configure:3593: result: no configure:3558: checking for mawk configure:3593: result: no configure:3558: checking for nawk configure:3593: result: no configure:3558: checking for awk configure:3579: found /usr/bin/awk configure:3590: result: awk configure:3601: checking whether make sets $(MAKE) configure:3624: result: yes configure:3654: checking whether make supports nested variables configure:3672: result: yes configure:3757: checking whether UID '65698565' is supported by ustar format configure:3763: result: no configure:3767: checking whether GID '1527229786' is supported by ustar format configure:3773: result: no configure:3778: checking how to create a ustar tar archive configure:3832: tardir=conftest.dir && eval false >conftest.tar configure:3835: $? = 1 configure:3861: result: none configure:3951: checking whether make supports the include directive configure:3966: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3969: $? = 0 configure:3988: result: yes (GNU style) configure:4064: checking for gcc configure:4085: found /usr/bin/gcc configure:4096: result: gcc configure:4449: checking for C compiler version configure:4458: gcc --version >&5 Apple clang version 14.0.0 (clang-1400.0.29.202) Target: arm64-apple-darwin21.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:4469: $? = 0 configure:4458: gcc -v >&5 Apple clang version 14.0.0 (clang-1400.0.29.202) Target: arm64-apple-darwin21.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:4469: $? = 0 configure:4458: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4469: $? = 1 configure:4458: gcc -qversion >&5 clang: error: unknown argument '-qversion'; did you mean '--version'? clang: error: no input files configure:4469: $? = 1 configure:4458: gcc -version >&5 clang: error: unknown argument '-version'; did you mean '--version'? clang: error: no input files configure:4469: $? = 1 configure:4489: checking whether the C compiler works configure:4511: gcc -Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN conftest.c >&5 configure:4515: $? = 0 configure:4565: result: yes configure:4568: checking for C compiler default output file name configure:4570: result: a.out configure:4576: checking for suffix of executables configure:4583: gcc -o conftest -Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN conftest.c >&5 configure:4587: $? = 0 configure:4610: result: configure:4632: checking whether we are cross compiling configure:4640: gcc -o conftest -Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN conftest.c >&5 configure:4644: $? = 0 configure:4651: ./conftest configure:4655: $? = 0 configure:4670: result: no configure:4675: checking for suffix of object files configure:4698: gcc -c conftest.c >&5 configure:4702: $? = 0 configure:4724: result: o configure:4728: checking whether the compiler supports GNU C configure:4748: gcc -c conftest.c >&5 configure:4748: $? = 0 configure:4758: result: yes configure:4769: checking whether gcc accepts -g configure:4790: gcc -c -g conftest.c >&5 configure:4790: $? = 0 configure:4834: result: yes configure:4854: checking for gcc option to enable C11 features configure:4869: gcc -c -g -O2 conftest.c >&5 configure:4869: $? = 0 configure:4887: result: none needed configure:5003: checking whether gcc understands -c and -o together configure:5026: gcc -c conftest.c -o conftest2.o configure:5029: $? = 0 configure:5026: gcc -c conftest.c -o conftest2.o configure:5029: $? = 0 configure:5041: result: yes configure:5060: checking dependency style of gcc configure:5172: result: gcc3 configure:5192: checking for stdio.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for stdlib.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for string.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for inttypes.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for stdint.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for strings.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for sys/stat.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for sys/types.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5192: checking for unistd.h configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5192: $? = 0 configure:5192: result: yes configure:5217: checking for int configure:5217: gcc -c -g -O2 conftest.c >&5 configure:5217: $? = 0 configure:5217: gcc -c -g -O2 conftest.c >&5 conftest.c:52:18: error: expected expression if (sizeof ((int))) ^ 1 error generated. configure:5217: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main (void) | { | if (sizeof ((int))) | return 0; | ; | return 0; | } configure:5217: result: yes configure:5223: checking for long configure:5223: gcc -c -g -O2 conftest.c >&5 configure:5223: $? = 0 configure:5223: gcc -c -g -O2 conftest.c >&5 conftest.c:52:19: error: expected expression if (sizeof ((long))) ^ 1 error generated. configure:5223: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main (void) | { | if (sizeof ((long))) | return 0; | ; | return 0; | } configure:5223: result: yes configure:5307: checking for g++ configure:5328: found /usr/bin/g++ configure:5339: result: g++ configure:5366: checking for C++ compiler version configure:5375: g++ --version >&5 Apple clang version 14.0.0 (clang-1400.0.29.202) Target: arm64-apple-darwin21.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:5386: $? = 0 configure:5375: g++ -v >&5 Apple clang version 14.0.0 (clang-1400.0.29.202) Target: arm64-apple-darwin21.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:5386: $? = 0 configure:5375: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:5386: $? = 1 configure:5375: g++ -qversion >&5 clang: error: unknown argument '-qversion'; did you mean '--version'? clang: error: no input files configure:5386: $? = 1 configure:5390: checking whether the compiler supports GNU C++ configure:5410: g++ -c -O3 -Bstatic -lgmp -Bdynamic -std=c++17 conftest.cpp >&5 clang: warning: -lgmp: 'linker' input unused [-Wunused-command-line-argument] configure:5410: $? = 0 configure:5420: result: yes configure:5431: checking whether g++ accepts -g configure:5452: g++ -c -g conftest.cpp >&5 configure:5452: $? = 0 configure:5496: result: yes configure:5516: checking for g++ option to enable C++11 features configure:5531: g++ -c -O3 -Bstatic -lgmp -Bdynamic -std=c++17 conftest.cpp >&5 clang: warning: -lgmp: 'linker' input unused [-Wunused-command-line-argument] conftest.cpp:187:25: warning: empty parentheses interpreted as a function declaration [-Wvexing-parse] cxx11test::delegate d2(); ^~ conftest.cpp:187:25: note: remove parentheses to declare a variable cxx11test::delegate d2(); ^~ 1 warning generated. configure:5531: $? = 0 configure:5549: result: none needed configure:5615: checking dependency style of g++ configure:5727: result: gcc3 configure:5747: checking for g++ configure:5768: found /usr/bin/g++ configure:5780: result: yes configure:5793: checking whether ln -s works configure:5797: result: yes configure:5804: checking for a sed that does not truncate output configure:5874: result: /usr/bin/sed configure:5879: checking whether make sets $(MAKE) configure:5902: result: yes configure:5914: checking for grep that handles long lines and -e configure:5978: result: /usr/bin/grep configure:5986: checking for egrep configure:6054: result: /usr/bin/grep -E configure:6080: checking if g++ supports -Woverloaded-virtual flag configure:6095: g++ -c -Woverloaded-virtual conftest.cpp >&5 configure:6095: $? = 0 configure:6109: result: yes configure:6196: checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "[[deprecated]]" keyword configure:6210: g++ -c -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror=attributes conftest.cpp >&5 clang: warning: -lgmp: 'linker' input unused [-Wunused-command-line-argument] conftest.cpp:21:73: warning: 'test' is deprecated [-Wdeprecated-declarations] class A{public: [[deprecated]] void test() {}}; int main(void){ A a; a.test(); return 0;} ^ conftest.cpp:21:20: note: 'test' has been explicitly marked deprecated here class A{public: [[deprecated]] void test() {}}; int main(void){ A a; a.test(); return 0;} ^ 1 warning generated. configure:6210: $? = 0 configure:6229: result: yes configure:6232: checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "__attribute__((deprecated))" keyword configure:6246: g++ -c -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror=attributes conftest.cpp >&5 clang: warning: -lgmp: 'linker' input unused [-Wunused-command-line-argument] conftest.cpp:22:84: warning: 'test' is deprecated [-Wdeprecated-declarations] class A{public: void test() __attribute__((deprecated)) {}};int main(void){ A a; a.test(); return 0;} ^ conftest.cpp:22:44: note: 'test' has been explicitly marked deprecated here class A{public: void test() __attribute__((deprecated)) {}};int main(void){ A a; a.test(); return 0;} ^ 1 warning generated. configure:6246: $? = 0 configure:6265: result: yes configure:6268: checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "override" keyword configure:6282: g++ -c -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror conftest.cpp >&5 clang: error: -lgmp: 'linker' input unused [-Werror,-Wunused-command-line-argument] configure:6282: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | /* end confdefs.h. */ | class A{public: virtual void test(){}}; class B : public A{public: virtual void test() override{}}; int main(void){ B b; b.test(); return 0;} configure:6301: result: no configure:6304: checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "[[deprecated]]" keyword configure:6318: g++ -c -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror -Wno-error=deprecated-declarations conftest.cpp >&5 clang: error: -lgmp: 'linker' input unused [-Werror,-Wunused-command-line-argument] configure:6318: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | /* end confdefs.h. */ | class A{public: [[deprecated]] void test() {}}; int main(void){ A a; a.test(); return 0;} configure:6337: result: no configure:6340: checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "__attribute__((deprecated))" keyword configure:6354: g++ -c -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror -Wno-error=deprecated-declarations conftest.cpp >&5 clang: error: -lgmp: 'linker' input unused [-Werror,-Wunused-command-line-argument] configure:6354: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | /* end confdefs.h. */ | class A{public: __attribute__((__deprecated__)) void test() {}};int main(void){ A a; a.test(); return 0;} configure:6373: result: no configure:6376: checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "override" keyword configure:6390: g++ -c -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror conftest.cpp >&5 clang: error: -lgmp: 'linker' input unused [-Werror,-Wunused-command-line-argument] configure:6390: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | /* end confdefs.h. */ | class A{public: virtual void test(){}}; class B : public A{public: virtual void test() override{}}; int main(void){ B b; b.test(); return 0;} configure:6409: result: no configure:6412: checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 supports the "explicit" keyword for operators configure:6426: g++ -c -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -Werror conftest.cpp >&5 clang: error: -lgmp: 'linker' input unused [-Werror,-Wunused-command-line-argument] configure:6426: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | /* end confdefs.h. */ | class A{public: explicit operator bool(){return true;}}; int main(void){ A a; bool b=bool(a); if (b) b=false; return 0;} configure:6445: result: no configure:6484: checking for execinfo.h configure:6484: gcc -c -g -O2 conftest.c >&5 configure:6484: $? = 0 configure:6484: result: yes configure:6492: checking for cos in -lm configure:6515: gcc -o conftest -g -O2 -Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN conftest.c -lm >&5 conftest.c:28:6: warning: incompatible redeclaration of library function 'cos' [-Wincompatible-library-redeclaration] char cos (); ^ conftest.c:28:6: note: 'cos' is a builtin with type 'double (double)' 1 warning generated. configure:6515: $? = 0 configure:6525: result: yes configure:6621: checking CGAL_MAKEFILE configure:6665: result: not specified configure:6684: checking whether C++ compiler accepts -frounding-math -Werror configure:6704: g++ -c -frounding-math -Werror conftest.cpp >&5 error: overriding currently unsupported rounding mode on this target [-Werror,-Wunsupported-floating-point-opt] 1 error generated. configure:6704: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | #define HAVE_EXECINFO_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | int | main (void) | { | | ; | return 0; | } configure:6715: result: no configure:6723: checking whether C++ compiler accepts -fp-model strict -Werror configure:6743: g++ -c -fp-model strict -Werror conftest.cpp >&5 clang: error: unknown argument: '-fp-model' clang: error: no such file or directory: 'strict' configure:6743: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | #define HAVE_EXECINFO_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | int | main (void) | { | | ; | return 0; | } configure:6754: result: no configure:6774: checking CGAL in /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1 configure:6794: result: lib configure:6859: checking for gmp.h configure:6859: gcc -c -g -O2 -I/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1/include conftest.c >&5 conftest.c:53:10: fatal error: 'gmp.h' file not found #include ^~~~~~~ 1 error generated. configure:6859: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | #define HAVE_EXECINFO_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:6859: result: no configure:6866: checking for main in -lgmp configure:6886: gcc -o conftest -g -O2 -I/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1/include -L/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1/lib -Wl,-rpath,/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1/lib -Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN conftest.c -lgmp -lm >&5 ld: library not found for -lgmp clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:6886: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "FastJet" | #define PACKAGE_TARNAME "fastjet" | #define PACKAGE_VERSION "3.4.0" | #define PACKAGE_STRING "FastJet 3.4.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "fastjet" | #define VERSION "3.4.0" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_CXX14_DEPRECATED /**/ | #define HAVE_GNUCXX_DEPRECATED /**/ | #define HAVE_EXECINFO_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | | int | main (void) | { | return main (); | ; | return 0; | } configure:6896: result: no configure:6914: error: CGAL explicitly requested and not found or not functional ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-O3 -Bstatic -lgmp -Bdynamic -std=c++17' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_PYTHON_CONFIG_set= ac_cv_env_PYTHON_CONFIG_value= ac_cv_env_PYTHON_INCLUDE_set=set ac_cv_env_PYTHON_INCLUDE_value=-I/Users/username/.pyenv/versions/3.10.6/include/python3.10 ac_cv_env_PYTHON_set=set ac_cv_env_PYTHON_value=/Users/username/dev/.direnv/python-3.10.6/bin/python ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_header_execinfo_h=yes ac_cv_header_gmp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_lib_gmp_main=no ac_cv_lib_m_cos=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_c11= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_11=no ac_cv_prog_cxx_cxx11= ac_cv_prog_cxx_found=yes ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_stdcxx= ac_cv_prog_make_make_set=yes ac_cv_type_int=yes ac_cv_type_long=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes am_cv_prog_tar_ustar=none ax_cv_cxx_flags__fp_model_strict__Werror=no ax_cv_cxx_flags__frounding_math__Werror=no ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/fastjet-core/missing'\'' aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' 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PACKAGE='fastjet' PACKAGE_BUGREPORT='' PACKAGE_NAME='FastJet' PACKAGE_STRING='FastJet 3.4.0' PACKAGE_TARNAME='fastjet' PACKAGE_URL='' PACKAGE_VERSION='3.4.0' PATH_SEPARATOR=':' PYTHON='/Users/username/dev/.direnv/python-3.10.6/bin/python' PYTHON_CONFIG='' PYTHON_EXEC_PREFIX='' PYTHON_INCLUDE='-I/Users/username/.pyenv/versions/3.10.6/include/python3.10' PYTHON_PLATFORM='' PYTHON_PREFIX='' PYTHON_VERSION='' RANLIB='' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='' SWIG='' SWIG_LIB='' VERSION='3.4.0' ac_ct_AR='' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='false' am__untar='false' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' cxx_found='yes' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/fastjet-core/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='' pkgpythondir='' prefix='/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/src/fastjet/_fastjet_core' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='' pythondir='' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "FastJet" #define PACKAGE_TARNAME "fastjet" #define PACKAGE_VERSION "3.4.0" #define PACKAGE_STRING "FastJet 3.4.0" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "fastjet" #define VERSION "3.4.0" #define HAVE_STDIO_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define STDC_HEADERS 1 #define HAVE_CXX14_DEPRECATED /**/ #define HAVE_GNUCXX_DEPRECATED /**/ #define HAVE_EXECINFO_H 1 #define HAVE_LIBM 1 configure: exit 1 Traceback (most recent call last): File "/Users/username/dev/.direnv/python-3.10.6/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in main() File "/Users/username/development/.direnv/python-3.10.6/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/Users/username/dev/.direnv/python-3.10.6/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel return _build_backend().build_wheel(wheel_directory, config_settings, File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 413, in build_wheel return self._build_with_temp_dir(['bdist_wheel'], '.whl', File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 398, in _build_with_temp_dir self.run_setup() File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 335, in run_setup exec(code, locals()) File "", line 190, in File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 108, in setup return distutils.core.setup(**attrs) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/normal/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 343, in run self.run_command("build") File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 131, in run self.run_command(cmd_name) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1221, in run_command super().run_command(command) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/command/build_ext.py", line 84, in run _build_ext.run(self) File "/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-4375zgzn/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run self.build_extensions() File "", line 97, in build_extensions File "/Users/username/.pyenv/versions/3.10.6/lib/python3.10/subprocess.py", line 524, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['./autogen.sh', '--prefix=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/src/fastjet/_fastjet_core', '--disable-auto-ptr', '--enable-allcxxplugins', '--enable-cgal-header-only', '--enable-cgal', '--with-cgaldir=/private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-install-wociuxbv/fastjet_0ce230ccca8c4a1697ccdb59887ef7c7/CGAL-5.5.1', '--enable-swig', '--enable-pyext', 'LDFLAGS=-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN']' returned non-zero exit status 1. [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for fastjet Failed to build fastjet ERROR: Could not build wheels for fastjet, which is required to install pyproject.toml-based projects [notice] A new release of pip available: 22.2.1 -> 23.0.1 [notice] To update, run: pip install --upgrade pip ```
chrispap95 commented 1 year ago

Can you try after installing the following?

brew install make gcc automake swig gmp mpfr boost
MycrofD commented 1 year ago

I had all of them installed already. I still did a brew reinstall make gcc automake swig gmp mpfr boost just in case. Error message does not change.

chrispap95 commented 1 year ago

Okay. Can you try the following just in case it works better?

git clone --recursive https://github.com/scikit-hep/fastjet.git
cd fastjet
pip install .
MycrofD commented 1 year ago

That also does not help. I get the same error.

lgray commented 1 year ago

FWIW I get the same error on my M1 MBP running latest Ventura. There's some messiness with the build environment I can't figure out. I ended up just building in a debian python container and bind-mounting fastjet!

chrispap95 commented 1 year ago

It looks like it can't find the brew installed gmp. Perhaps something like the following could help

CXXFLAGS=-I`brew --prefix gmp`/include LDFLAGS=-L`brew --prefix gmp`/lib pip install .

However, we override these in setup.py... If you are feeling brave you could add them to your local setup.py and try again with pip install .

MycrofD commented 1 year ago

@chrispap95 I tried the one with CXXFLAGS but I see no difference, probably because this is overridden in setup.py as you pointed out.

I also edited the lines in setup.py at env["CXXFLAGS"] = "-O3 -Bstatic -lgmp -Bdynamic -std=c++17" and "CXXFLAGS=-O3 -Bstatic -Bdynamic -std=c++17",.

I still don't see any changes in the log.

chrispap95 commented 1 year ago

I am afraid I can't do much since I don't have a machine with Apple silicon. Can you try the following? Just to see if it can find gmp.

cat >> test.c << "EOF"
#include <gmp.h>
int main(){return 0;}
EOF
gcc -o test test.c -lgmp

If the last line fails, then try with

gcc -o test test.c -I`brew --prefix gmp`/include -L`brew --prefix gmp`/lib

If this fails as well, then I have really no idea how to get this working.

MycrofD commented 1 year ago

I am afraid I can't do much since I don't have a machine with Apple silicon. Can you try the following? Just to see if it can find gmp.

cat >> test.c << "EOF"
#include <gmp.h>
int main(){return 0;}
EOF
gcc -o test test.c -lgmp

If the last line fails, then try with

Yes, the last line failed.

gcc -o test test.c -I`brew --prefix gmp`/include -L`brew --prefix gmp`/lib

This did not fail. So, maybe we know where the problem is?

If this fails as well, then I have really no idea how to get this working.

chrispap95 commented 1 year ago

Okay, very interesting. So these flags seem to work but we need to figure out how to pass them to pip. How did you add them to setup.py? What I would expect to work is the following: https://github.com/scikit-hep/fastjet/blob/apple_silicon/setup.py

You could try this by changing to the branch apple_silicon and trying again with pip install .

MycrofD commented 1 year ago

Hmm, this does not work. Here are the initial lines of the log I got.

log: ``` × Building wheel for fastjet (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [1345 lines of output] /private/var/folders/0g/n7p18ft16y3_8bwz00w_1kw81ymyr5/T/pip-build-env-74pl2dyu/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:516: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) running bdist_wheel running build running build_py running egg_info writing src/fastjet.egg-info/PKG-INFO writing dependency_links to src/fastjet.egg-info/dependency_links.txt writing requirements to src/fastjet.egg-info/requires.txt writing top-level names to src/fastjet.egg-info/top_level.txt reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/fastjet.egg-info/SOURCES.txt' running build_ext patching file pyinterface/fastjet.i Reversed (or previously applied) patch detected! Assume -R? [n] Apply anyway? [n] Skipping patch. 1 out of 1 hunk ignored -- saving rejects to file pyinterface/fastjet.i.rej patching file src/ClusterSequence.cc Reversed (or previously applied) patch detected! Assume -R? [n] Apply anyway? [n] Skipping patch. 2 out of 2 hunks ignored -- saving rejects to file src/ClusterSequence.cc.rej ./autogen.sh: line 34: [: too many arguments processing . Running libtoolize... glibtoolize: putting auxiliary files in '.'. glibtoolize: copying file './ltmain.sh' glibtoolize: putting macros in 'm4'. glibtoolize: copying file 'm4/libtool.m4' glibtoolize: copying file 'm4/ltoptions.m4' glibtoolize: copying file 'm4/ltsugar.m4' glibtoolize: copying file 'm4/ltversion.m4' glibtoolize: copying file 'm4/lt~obsolete.m4' glibtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, glibtoolize: and rerunning glibtoolize and aclocal. Running aclocal -I m4 ... Running automake --gnu ... configure.ac:50: installing './compile' configure.ac:3: installing './missing' example/Makefile.am: installing './depcomp' pyinterface/Makefile.am:82: warning: eval AM_LIBTOOLFLAGS = "--silent": non-POSIX variable name pyinterface/Makefile.am:82: (probably a GNU make extension) pyinterface/Makefile.am:87: warning: eval AM_LIBTOOLFLAGS = "": non-POSIX variable name pyinterface/Makefile.am:87: (probably a GNU make extension) Running autoconf ... configure.ac:88: warning: The macro `AC_STDC_HEADERS' is obsolete. configure.ac:88: You should run autoupdate. ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:88: the top level configure.ac:88: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:88: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:88: the top level configure.ac:303: warning: The macro `AM_ENABLE_SHARED' is obsolete. configure.ac:303: You should run autoupdate. m4/ltoptions.m4:205: AM_ENABLE_SHARED is expanded from... configure.ac:303: the top level configure.ac:342: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:342: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from... m4/CGAL.m4:15: ACX_CHECK_CGAL is expanded from... configure.ac:342: the top level configure.ac:342: warning: The macro `AC_ERROR' is obsolete. configure.ac:342: You should run autoupdate. ./lib/autoconf/oldnames.m4:34: AC_ERROR is expanded from... m4/CGAL.m4:15: ACX_CHECK_CGAL is expanded from... configure.ac:342: the top level configure.ac:491: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:491: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:491: the top level configure.ac:647: warning: The macro `SWIG_ENABLE_CXX' is obsolete. configure.ac:647: You should run autoupdate. m4/ax_swig_enable_cxx.m4:48: SWIG_ENABLE_CXX is expanded from... configure.ac:647: the top level configure.ac:648: warning: The macro `SWIG_PYTHON' is obsolete. configure.ac:648: You should run autoupdate. m4/ax_swig_python.m4:57: SWIG_PYTHON is expanded from... configure.ac:648: the top level processing ./plugins/SISCone/siscone Running libtoolize... glibtoolize: putting auxiliary files in '.'. glibtoolize: copying file './ltmain.sh' glibtoolize: putting macros in 'm4'. glibtoolize: copying file 'm4/libtool.m4' glibtoolize: copying file 'm4/ltoptions.m4' glibtoolize: copying file 'm4/ltsugar.m4' glibtoolize: copying file 'm4/ltversion.m4' glibtoolize: copying file 'm4/lt~obsolete.m4' glibtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, glibtoolize: and rerunning glibtoolize and aclocal. Running aclocal -I m4 ... Running automake --gnu ... configure.ac:21: installing './compile' configure.ac:3: installing './missing' examples/Makefile.am: installing './depcomp' Running autoconf ... configure.ac:36: warning: The macro `AC_STDC_HEADERS' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:36: the top level configure.ac:36: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... ./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from... configure.ac:36: the top level configure.ac:73: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:98: warning: AC_OUTPUT should be used without arguments. configure.ac:98: You should run autoupdate. Running ./configure --prefix=/Users/username/dev/fastjet/src/fastjet/_fastjet_core --enable-thread-safety --disable-auto-ptr --enable-allcxxplugins --enable-cgal-header-only --enable-cgal --with-cgaldir=/Users/username/dev/fastjet/CGAL-5.5.1 --enable-swig --enable-pyext LDFLAGS=-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN,-L`brew --prefix gmp`/lib ... checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '65698565' is supported by ustar format... no checking whether GID '1527229786' is supported by ustar format... no checking how to create a ustar tar archive... none checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for int... yes checking for long... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... gcc3 checking for g++... yes checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether make sets $(MAKE)... (cached) yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking if g++ supports -Woverloaded-virtual flag... yes configure: WARNING: Thread safety uses C++11 features and may require additional compiler arguments, these have to be specified by the user checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "[[deprecated]]" keyword... yes checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "__attribute__((deprecated))" keyword... yes checking if g++ -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "override" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "[[deprecated]]" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "__attribute__((deprecated))" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "override" keyword... no checking if g++ -g -Woverloaded-virtual -O3 -Bstatic -lgmp -Bdynamic -std=c++17 -I`brew --prefix gmp`/include supports the "explicit" keyword for operators... no checking for execinfo.h... yes checking for cos in -lm... yes checking CGAL_MAKEFILE... not specified checking whether C++ compiler accepts -frounding-math -Werror... no checking whether C++ compiler accepts -fp-model strict -Werror... no checking CGAL in /Users/username/dev/fastjet/CGAL-5.5.1... lib checking for gmp.h... no checking for main in -lgmp... no configure: error: CGAL explicitly requested and not found or not functional This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by FastJet configure 3.4.0, which was generated by GNU Autoconf 2.71. Invocation command line was $ ./configure --prefix=/Users/username/dev/fastjet/src/fastjet/_fastjet_core --enable-thread-safety --disable-auto-ptr --enable-allcxxplugins --enable-cgal-header-only --enable-cgal --with-cgaldir=/Users/username/dev/fastjet/CGAL-5.5.1 --enable-swig --enable-pyext 'LDFLAGS=-Wl,-rpath,$$ORIGIN/_fastjet_core/lib:$$ORIGIN,-L`brew --prefix gmp`/lib' ```
MycrofD commented 1 year ago

It seems like this is related. https://github.com/microsoft/vcpkg/issues/15956

chrispap95 commented 1 year ago

If the rest of the printout looks the same as before, then I have no idea what to try next, and without a machine available to experiment I can't go wild with trials to fix this. The solution that Lindsey provided doesn't look that bad. Maybe try that instead?

MycrofD commented 1 year ago

Thanks a lot @chrispap95 for the help. Do you have a sample docker-compose.yaml @lgray for me to get started with?

lgray commented 1 year ago

docker run -it --rm --entrypoint=/bin/bash -v /path/to/fastjet:/root/fastjet python:3.10-bullseye

You'll have to apt install packages and such to build, you might want to make your own Dockerfile for sanity's sake. Since I was doing a one-off I didn't make one.

matthewfeickert commented 6 months ago

I recently got access to an Apple silicon (M2) machine that I can use for dev work as well. I haven't done local dev work on an Apple computer for about 12 years at this point (👴) so while I know that brew seems to be the only feasible way to do dev work on a Mac I'm curious if it would be possible to setup a dev environment using only conda-forge. Hopefully some of you can tell me if this is a terrible idea or not.

At the moment I have a dev-macosx-arm64-environment.yml that I'm working on expanding

name: fastjet-dev
channels:
  - conda-forge
dependencies:
  - python=3.11
  - autoconf
  - automake
  - cgal-cpp
  - gmp
  - libtool
  - make
  - patch
  - pybind11
  - swig

removal of the cgal local download and setup from setup.py

-            zip_filename = DIR / pathlib.Path(CGAL_ZIP).parts[-1]
-
-            with urllib.request.urlopen(CGAL_ZIP) as http_obj:
-                with open(zip_filename, "wb") as file_obj:
-                    shutil.copyfileobj(http_obj, file_obj)
-
-            with zipfile.ZipFile(zip_filename) as zip_obj:
-                cgal_dir = DIR / zip_obj.namelist()[0]
-                zip_obj.extractall(DIR)
-

...

-                f"--with-cgaldir={cgal_dir}",

and a build.sh script to reset the state of the fastjet-core submodule

#!/bin/bash

rm -rf CGAL-5.6*
rm -rf build

cd fastjet-core
git reset --hard fastjet-3.4.2
cd ..

python -m pip install --upgrade --verbose .

So far I'm failing extremely early

...
  Detected Mac OSX

  On Mac OSX, ./autogen.sh requires the GNU libtool and libtoolize scripts,
  renamed glibtol and glibtoolize respectively by Apple to avoid
  conflict with Apple-provided libtool.

  They should be already installed, together with Apple developer tools,
  in /usr/bin. If you see this message, they are not.
...

but I'm curious if this is possible at all to do with just conda-forge.