chrisburr
commented
4 years ago What is the output of conda info? And conda list?
Closed goi42 closed 4 years ago
chrisburr
commented
4 years ago What is the output of conda info? And conda list?
goi42
commented
4 years ago $ conda info
active environment : base
active env location : /Users/michael/anaconda2
shell level : 1
user config file : /Users/michael/.condarc
populated config files : /Users/michael/.condarc
conda version : 4.7.12
conda-build version : 3.18.8
python version : 2.7.16.final.0
virtual packages :
base environment : /Users/michael/anaconda2 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/michael/anaconda2/pkgs
/Users/michael/.conda/pkgs
envs directories : /Users/michael/anaconda2/envs
/Users/michael/.conda/envs
platform : osx-64
user-agent : conda/4.7.12 requests/2.22.0 CPython/2.7.16 Darwin/19.0.0 OSX/10.15.1
UID:GID : 502:20
netrc file : None
offline mode : False$ conda list
# packages in environment at /Users/michael/anaconda2:
#
# Name Version Build Channel
_anaconda_depends 2019.03 py27_0
_ipyw_jlab_nb_ext_conf 0.1.0 py27_0
alabaster 0.7.12 py27_0
anaconda custom py27_1
anaconda-client 1.7.2 py27_0
anaconda-navigator 1.9.7 py27_0
anaconda-project 0.8.3 py_0
appnope 0.1.0 py27hb466136_0
appscript 1.1.0 py27h1de35cc_0
asn1crypto 1.0.1 py27_0
astroid 1.6.5 py27_0
astropy 2.0.9 py27h1d22016_0
atomicwrites 1.3.0 py27_1
attrs 19.2.0 py_0
autopep8 1.4.4 pypi_0 pypi
babel 2.7.0 py_0
backports 1.0 py_2
backports.functools_lru_cache 1.5 py_2
backports.os 0.1.1 py27_0
backports.shutil_get_terminal_size 1.0.0 py27_2
backports.tempfile 1.0 py_1
backports.weakref 1.0.post1 py_1
backports_abc 0.5 py27h6972548_0
beautifulsoup4 4.8.0 py27_0
bitarray 1.0.1 py27h1de35cc_0
bkcharts 0.2 py27haafc882_0
blas 1.0 mkl
bleach 3.1.0 py27_0
blosc 1.16.3 hd9629dc_0
bokeh 1.3.4 py27_0
boto 2.49.0 py27_0
bottleneck 1.2.1 py27h1d22016_1
bzip2 1.0.8 h1de35cc_0
ca-certificates 2019.8.28 0
cdecimal 2.3 py27h1de35cc_3
certifi 2019.9.11 py27_0
cffi 1.12.3 py27hb5b8e2f_0
chardet 3.0.4 py27_1003
click 7.0 py27_0
cloudpickle 1.2.2 py_0
clyent 1.2.2 py27_1
colorama 0.4.1 py27_0
conda 4.7.12 py27_0
conda-build 3.18.8 py27_0
conda-env 2.6.0 1
conda-package-handling 1.6.0 py27h1de35cc_0
conda-verify 3.4.2 py_1
configparser 4.0.2 py27_0
contextlib2 0.6.0 py_0
cryptography 2.7 py27ha12b0ac_0
curl 7.65.3 ha441bb4_0
cycler 0.10.0 py27hfc73c78_0
cython 0.29.13 py27h0a44026_0
cytoolz 0.10.0 py27h1de35cc_0
dask 1.2.2 py_0
dask-core 1.2.2 py_0
dbus 1.13.6 h90a0687_0
decorator 4.4.0 py27_1
defusedxml 0.6.0 py_0
distributed 1.28.1 py27_0
docutils 0.15.2 py27_0
entrypoints 0.3 py27_0
enum34 1.1.6 py27_1
et_xmlfile 1.0.1 py27hc42f929_0
expat 2.2.6 h0a44026_0
fastcache 1.1.0 py27h1de35cc_0
filelock 3.0.12 py_0
flask 1.1.1 py_0
freetype 2.9.1 hb4e5f40_0
funcsigs 1.0.2 py27hb9f6266_0
functools32 3.2.3.2 py27_1
future 0.17.1 py27_0
futures 3.3.0 py27_0
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h15daf44_3
gevent 1.4.0 py27h1de35cc_0
glib 2.56.2 hd9629dc_0
glob2 0.7 py_0
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py27h6ef4df4_2
greenlet 0.4.15 py27h1de35cc_0
grin 1.2.1 py27_4
h5py 2.9.0 py27h3134771_0
hdf5 1.10.4 hfa1e0ec_0
heapdict 1.0.1 py_0
html5lib 1.0.1 py27_0
icu 58.2 h4b95b61_1
idna 2.8 py27_0
imageio 2.6.0 py27_0
imagesize 1.1.0 py27_0
importlib_metadata 0.23 py27_0
intel-openmp 2019.4 233
ipaddress 1.0.22 py27_0
ipykernel 4.10.0 py27_0
ipython 5.8.0 py27_0
ipython_genutils 0.2.0 py27h8b9a179_0
ipywidgets 7.5.1 py_0
isort 4.3.21 py27_0
itsdangerous 1.1.0 py27_0
jbig 2.1 h4d881f8_0
jdcal 1.4.1 py_0
jedi 0.15.1 py27_0
jinja2 2.10.3 py_0
jpeg 9b he5867d9_2
jsonschema 3.0.2 py27_0
jupyter 1.0.0 py27_7
jupyter_client 5.3.3 py27_1
jupyter_console 5.2.0 py27_1
jupyter_core 4.5.0 py_0
jupyterlab 0.33.11 py27_0
jupyterlab_launcher 0.11.2 py27h28b3542_0
keyring 18.0.0 py27_0
kiwisolver 1.1.0 py27h0a44026_0
krb5 1.16.1 hddcf347_7
lazy-object-proxy 1.4.2 py27h1de35cc_0
libarchive 3.3.3 h786848e_5
libcurl 7.65.3 h051b688_0
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
liblief 0.9.0 h2a1bed3_2
libpng 1.6.37 ha441bb4_0
libsodium 1.0.16 h3efe00b_0
libssh2 1.8.2 ha12b0ac_0
libtiff 4.0.10 hcb84e12_2
libxml2 2.9.9 hf6e021a_1
libxslt 1.1.33 h33a18ac_0
linecache2 1.0.0 py27_0
llvmlite 0.29.0 py27h98b8051_0
locket 0.2.0 py27ha10513d_1
lxml 4.4.1 py27hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h362108e_2
markupsafe 1.1.1 py27h1de35cc_0
matplotlib 2.2.3 py27h54f8f79_0
mccabe 0.6.1 py27_1
mistune 0.8.4 py27h1de35cc_0
mkl 2019.4 233
mkl-service 2.3.0 py27hfbe908c_0
mkl_fft 1.0.14 py27h5e564d8_0
mkl_random 1.1.0 py27ha771720_0
mock 3.0.5 py27_0
more-itertools 5.0.0 py27_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py27_0
msgpack-python 0.6.1 py27h04f5b5a_1
multipledispatch 0.6.0 py27_0
navigator-updater 0.2.1 py27_0
nbconvert 5.6.0 py27_1
nbformat 4.4.0 py27hddc86d0_0
ncurses 6.1 h0a44026_1
networkx 2.2 py27_1
nltk 3.4.5 py27_0
nose 1.3.7 py27_2
notebook 5.7.8 py27_0
numba 0.44.1 py27h6440ff4_0
numexpr 2.7.0 py27h7413580_0
numpy 1.16.4 py27hacdab7b_0
numpy-base 1.16.4 py27h6575580_0
numpydoc 0.9.1 py_0
olefile 0.46 py27_0
openpyxl 2.6.2 py_0
openssl 1.1.1d h1de35cc_2
packaging 19.2 py_0
pandas 0.24.2 py27h0a44026_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py27_1
parso 0.5.1 py_0
partd 1.0.0 py_0
path.py 11.5.0 py27_0
pathlib2 2.3.5 py27_0
patsy 0.5.1 py27_0
pcre 8.43 h0a44026_0
pep8 1.7.1 py27_0
pexpect 4.7.0 py27_0
pickleshare 0.7.5 py27_0
pillow 6.2.0 py27hb68e598_0
pip 19.2.3 py27_0
pkginfo 1.5.0.1 py27_0
pluggy 0.13.0 py27_0
ply 3.11 py27_0
portaudio 19.6.0 h41429eb_1
progressbar 2.5 pypi_0 pypi
prometheus_client 0.7.1 py_0
prompt_toolkit 1.0.15 py27h4a7b9c2_0
psutil 5.6.3 py27h1de35cc_0
ptyprocess 0.6.0 py27_0
py 1.8.0 py27_0
py-lief 0.9.0 py27h1413db1_2
pyaudio 0.2.11 py27h1de35cc_1
pycodestyle 2.5.0 py27_0
pycosat 0.6.3 py27h1de35cc_0
pycparser 2.19 py27_0
pycrypto 2.6.1 py27h1de35cc_9
pycurl 7.43.0.3 py27ha12b0ac_0
pyflakes 2.1.1 py27_0
pygments 2.4.2 py_0
pylint 1.9.2 py27_0
pyodbc 4.0.27 py27h0a44026_0
pyopenssl 19.0.0 py27_0
pyparsing 2.4.2 py_0
pyqt 5.9.2 py27h655552a_2
pyrsistent 0.15.4 py27h1de35cc_0
pysocks 1.7.1 py27_0
pytables 3.5.2 py27h5bccee9_1
pytest 4.6.2 py27_0
python 2.7.16 h97142e2_0
python-dateutil 2.8.0 py27_0
python-libarchive-c 2.8 py27_13
python.app 2 py27_9
pytz 2019.3 py_0
pywavelets 1.0.3 py27h1d22016_1
pyyaml 5.1.1 py27h1de35cc_0
pyzmq 18.1.0 py27h0a44026_0
qt 5.9.7 h468cd18_1
qtawesome 0.6.0 py_0
qtconsole 4.5.5 py_0
qtpy 1.9.0 py_0
readline 7.0 h1de35cc_5
requests 2.22.0 py27_0
root-numpy 4.8.0 pypi_0 pypi
root-pandas 0.7.0 pypi_0 pypi
rope 0.14.0 py_0
ruamel_yaml 0.15.46 py27h1de35cc_0
scandir 1.10.0 py27h1de35cc_0
scikit-image 0.14.2 py27h0a44026_0
scikit-learn 0.20.3 py27h27c97d8_0
scipy 1.2.1 py27h1410ff5_0
seaborn 0.9.0 py27_0
send2trash 1.5.0 py27_0
setuptools 41.4.0 py27_0
simplegeneric 0.8.1 py27_2
singledispatch 3.4.0.3 py27he22c18d_0
sip 4.19.8 py27h0a44026_0
six 1.12.0 py27_0
snappy 1.1.7 he62c110_3
snowballstemmer 2.0.0 py_0
sortedcollections 1.1.2 py27_0
sortedcontainers 2.1.0 py27_0
soupsieve 1.9.3 py27_0
sphinx 1.8.5 py27_0
sphinxcontrib 1.0 py27_1
sphinxcontrib-websupport 1.1.2 py_0
spyder 3.3.6 py27_0
spyder-kernels 0.5.2 py27_0
sqlalchemy 1.3.9 py27h1de35cc_0
sqlite 3.30.0 ha441bb4_0
ssl_match_hostname 3.7.0.1 py27_0
statsmodels 0.10.1 py27h1d22016_0
subprocess32 3.5.4 py27h1de35cc_0
sympy 1.4 py27_0
tbb 2019.8 h04f5b5a_0
tblib 1.4.0 py_0
terminado 0.8.2 py27_0
testpath 0.4.2 py27_0
tk 8.6.8 ha441bb4_0
toolz 0.10.0 py_0
tornado 5.1.1 py27h1de35cc_0
tqdm 4.36.1 py_0
traceback2 1.4.0 py27_0
traitlets 4.3.3 py27_0
typing 3.7.4.1 py27_0
uncertainties 3.1.2 pypi_0 pypi
unicodecsv 0.14.1 py27h170f95c_0
unittest2 1.1.0 py27_0
unixodbc 2.3.7 h1de35cc_0
urllib3 1.24.2 py27_0
wcwidth 0.1.7 py27h817c265_0
webencodings 0.5.1 py27_1
werkzeug 0.16.0 py_0
wheel 0.33.6 py27_0
widgetsnbextension 3.5.1 py27_0
wrapt 1.11.2 py27h1de35cc_0
wurlitzer 1.0.3 py27_0
xlrd 1.2.0 py27_0
xlsxwriter 1.2.1 py_0
xlwings 0.15.10 py27_0
xlwt 1.2.0 py27hbeec4ae_0
xz 5.2.4 h1de35cc_4
yaml 0.1.7 hc338f04_2
zeromq 4.3.1 h0a44026_3
zict 1.0.0 py_0
zipp 0.6.0 py_0
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0 Where are you getting ROOT from? It's likely your root_numpy installation from pip is incompatible with your install of ROOT.
You can create a consistent conda environment where root_numpy is aware of the version of root:
conda config --add channels conda-forge: only needed once, alternatively add -c conda-forge to all your conda install and conda create commandsconda create --name my-conda-root-env python=3.7 root root_pandas scikit-learn: create the environmentconda activate my-conda-root-env: activate the environment whenever you want to use itIf you get an error about Your shell has not been properly configured to use 'conda activate'. your conda installation isn't set up correctly and you need to:
conda config --set auto_activate_base false (prevent conda from doing anything until you activate an environment)eval "$(conda shell.bash hook)" to your bashrcAlternatively, pip install root_numpy --no-binary root_numpy --upgrade might work but it's fragile.
goi42
commented
4 years ago I build ROOT from the master branch on GitHub.
The conda environment fix doesn't seem to work:
$ conda config --add channels conda-forge
$ conda create --name my-root_pandas-env python=2.7.16 root root_pandas scikit-learn
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.7.12
latest version: 4.8.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/michael/anaconda2/envs/my-root_pandas-env
added / updated specs:
- python=2.7.16
- root
- root_pandas
- scikit-learn
The following packages will be downloaded:
package | build
---------------------------|-----------------
afterimage-1.21 | h044d061_1002 668 KB conda-forge
appnope-0.1.0 | py27_1000 8 KB conda-forge
attrs-19.3.0 | py_0 35 KB conda-forge
backports-1.0 | py_2 4 KB conda-forge
backports.shutil_get_terminal_size-1.0.0| py_3 7 KB conda-forge
backports_abc-0.5 | py_1 5 KB conda-forge
binutils-1.0.1 | 0 6 KB conda-forge
blas-1.1 | openblas 1 KB conda-forge
bleach-3.1.0 | py_0 110 KB conda-forge
bzip2-1.0.8 | h0b31af3_2 152 KB conda-forge
c-compiler-1.0.1 | h1de35cc_0 4 KB conda-forge
ca-certificates-2019.11.28 | hecc5488_0 145 KB conda-forge
cairo-1.16.0 | he1c11cd_1002 1.3 MB conda-forge
cctools-895 | h7512d6f_0 1.5 MB conda-forge
certifi-2019.11.28 | py27_0 149 KB conda-forge
cfitsio-3.470 | h389770f_2 1.4 MB conda-forge
clang-4.0.1 | h662ec87_0 73.7 MB conda-forge
clang_osx-64-4.0.1 | h1ce6c1d_17 145 KB conda-forge
clangxx-4.0.1 | hc9b4283_0 10 KB conda-forge
clangxx_osx-64-4.0.1 | h22b1bf0_17 146 KB conda-forge
compiler-rt-4.0.1 | h5487866_0 963 KB conda-forge
compilers-1.0.1 | 0 4 KB conda-forge
configparser-3.7.3 | py27_1 36 KB conda-forge
contextlib2-0.6.0.post1 | py_0 12 KB conda-forge
curl-7.65.3 | h22ea746_0 125 KB conda-forge
cxx-compiler-1.0.1 | h04f5b5a_0 4 KB conda-forge
davix-0.7.5 | h7232a33_0 1.5 MB conda-forge
decorator-4.4.1 | py_0 11 KB conda-forge
defusedxml-0.6.0 | py_0 22 KB conda-forge
entrypoints-0.3 | py27_1000 13 KB conda-forge
enum34-1.1.6 | py27_1002 57 KB conda-forge
fftw-3.3.8 |mpi_mpich_h6e18f22_1009 5.3 MB conda-forge
fontconfig-2.13.1 | h6b1039f_1001 270 KB conda-forge
fortran-compiler-1.0.1 | h4f947d3_0 4 KB conda-forge
freetype-2.10.0 | h24853df_1 894 KB conda-forge
fribidi-1.0.5 | h01d97ff_1002 62 KB conda-forge
functools32-3.2.3.2 | py_3 15 KB conda-forge
futures-3.3.0 | py27_0 25 KB conda-forge
gdk-pixbuf-2.36.12 | h284f8de_1003 568 KB conda-forge
gettext-0.19.8.1 | h46ab8bc_1002 3.3 MB conda-forge
gfortran_osx-64-4.8.5 | h22b1bf0_8 7.4 MB conda-forge
giflib-5.1.7 | h01d97ff_1 140 KB conda-forge
glew-2.0.0 | h0a44026_1002 565 KB conda-forge
glib-2.58.3 | h9d45998_1002 3.1 MB conda-forge
gobject-introspection-1.56.1|py27h64a7abb_1002 1.2 MB conda-forge
graphite2-1.3.13 | h2098e52_1000 84 KB conda-forge
graphviz-2.40.1 | ha626266_1 6.5 MB conda-forge
gsl-2.5 | ha2d443c_1 2.7 MB conda-forge
harfbuzz-2.4.0 | hd8d2a14_3 1.2 MB conda-forge
icu-64.2 | h6de7cb9_1 12.3 MB conda-forge
importlib_metadata-1.3.0 | py27_0 39 KB conda-forge
ipaddress-1.0.23 | py_0 19 KB conda-forge
ipykernel-4.10.0 | py27_0 144 KB conda-forge
ipyparallel-6.2.4 | py27_0 307 KB conda-forge
ipython-5.8.0 | py27_0 1.0 MB conda-forge
ipython_genutils-0.2.0 | py_1 21 KB conda-forge
jinja2-2.10.3 | py_0 91 KB conda-forge
jpeg-9c | h1de35cc_1001 237 KB conda-forge
jsonschema-3.2.0 | py27_0 87 KB conda-forge
jupyter_client-5.3.3 | py27_1 129 KB conda-forge
jupyter_core-4.6.1 | py27_0 70 KB conda-forge
krb5-1.16.3 | hcfa6398_1001 1.1 MB conda-forge
ld64-274.2 | h7c2db76_0 2.6 MB conda-forge
libblas-3.8.0 | 11_openblas 10 KB conda-forge
libcblas-3.8.0 | 11_openblas 10 KB conda-forge
libcroco-0.6.13 | hc484408_0 115 KB conda-forge
libcurl-7.65.3 | h16faf7d_0 547 KB conda-forge
libcxx-4.0.1 | h579ed51_0 717 KB
libcxxabi-4.0.1 | hebd6815_0 149 KB conda-forge
libffi-3.2.1 | h6de7cb9_1006 43 KB conda-forge
libgfortran-3.0.1 | 0 495 KB conda-forge
libiconv-1.15 | h01d97ff_1005 1.3 MB conda-forge
libopenblas-0.3.6 | hdc02c5d_2 8.5 MB
libpng-1.6.37 | h2573ce8_0 298 KB conda-forge
librsvg-2.44.15 | h90c2430_0 2.2 MB conda-forge
libsodium-1.0.17 | h01d97ff_0 308 KB conda-forge
libssh2-1.8.2 | hcdc9a53_2 221 KB conda-forge
libtiff-4.0.9 | h79f4b77_1002 542 KB conda-forge
libxml2-2.9.10 | h53d96d6_0 1.2 MB conda-forge
llvm-4.0.1 | hc748206_0 136.7 MB conda-forge
llvm-lto-tapi-4.0.1 | h6701bc3_0 11.7 MB conda-forge
llvm-openmp-9.0.0 | h40edb58_0 266 KB conda-forge
lz4-2.2.1 | py27he1520b0_0 125 KB conda-forge
lz4-c-1.8.3 | h6de7cb9_1001 139 KB conda-forge
markupsafe-1.1.1 | py27h0b31af3_0 24 KB conda-forge
metakernel-0.24.3 | py_0 179 KB conda-forge
mistune-0.8.4 |py27h0b31af3_1000 52 KB conda-forge
more-itertools-5.0.0 | py_0 44 KB conda-forge
mpi-1.0 | mpich 4 KB conda-forge
mpich-3.2.1 | ha90c164_1014 4.1 MB conda-forge
nbconvert-5.6.1 | py27_0 487 KB conda-forge
nbformat-4.4.0 | py_1 91 KB conda-forge
ncurses-6.1 | h0a44026_1002 1.3 MB conda-forge
notebook-5.7.8 | py27_1 5.9 MB conda-forge
numpy-1.16.2 |py27_blas_openblash486cb9f_0 4.1 MB conda-forge
openblas-0.3.3 | hdc02c5d_1001 17.6 MB conda-forge
openssl-1.1.1d | h0b31af3_0 1.9 MB conda-forge
pandas-0.24.2 | py27h86efe34_0 10.0 MB conda-forge
pandoc-2.9 | 0 21.1 MB conda-forge
pandocfilters-1.4.2 | py_1 9 KB conda-forge
pango-1.42.4 | h6691c8e_1 522 KB conda-forge
pathlib2-2.3.5 | py27_0 33 KB conda-forge
pcre-8.41 | h0a44026_1003 222 KB conda-forge
pexpect-4.7.0 | py27_0 76 KB conda-forge
pickleshare-0.7.5 | py27_1000 12 KB conda-forge
pip-19.3.1 | py27_0 1.9 MB conda-forge
pixman-0.38.0 | h01d97ff_1003 611 KB conda-forge
portalocker-1.5.2 | py27_0 17 KB conda-forge
prometheus_client-0.7.1 | py_0 38 KB conda-forge
prompt_toolkit-1.0.15 | py_1 154 KB conda-forge
ptyprocess-0.6.0 | py_1001 15 KB conda-forge
pygments-2.5.2 | py_0 669 KB conda-forge
pyrsistent-0.15.6 | py27h0b31af3_0 85 KB conda-forge
pythia8-8.240 | py27h6de7cb9_2 25.8 MB conda-forge
python-2.7.16 | h97142e2_7 9.2 MB
python-dateutil-2.8.1 | py_0 220 KB conda-forge
pytz-2019.3 | py_0 237 KB conda-forge
pyzmq-18.1.0 | py27hee98d25_0 433 KB conda-forge
qt-5.9.7 | h8cf7e54_3 76.8 MB conda-forge
readline-7.0 | hcfe32e1_1001 393 KB conda-forge
root-6.18.00 | py27h500fca7_17 117.8 MB conda-forge
root_numpy-4.8.0 | py27haf112f3_2 481 KB conda-forge
root_pandas-0.7.0 | py_0 2.3 MB conda-forge
scandir-1.10.0 | py27h0b31af3_0 26 KB conda-forge
scikit-learn-0.20.4 |py27_blas_openblashc6dc708_0 5.3 MB conda-forge
scipy-1.2.1 |py27_blas_openblash486cb9f_0 15.8 MB conda-forge
send2trash-1.5.0 | py_0 12 KB conda-forge
setuptools-42.0.2 | py27_0 642 KB conda-forge
simplegeneric-0.8.1 | py_1 7 KB conda-forge
singledispatch-3.4.0.3 | py27_1000 15 KB conda-forge
six-1.13.0 | py27_0 22 KB conda-forge
sqlite-3.30.1 | ha441bb4_0 2.4 MB
tbb-2019.8 | h770b8ee_0 157 KB conda-forge
tbb-devel-2019.8 | h770b8ee_0 726 KB conda-forge
terminado-0.8.3 | py27_0 22 KB conda-forge
testpath-0.4.4 | py_0 85 KB conda-forge
tk-8.6.10 | hbbe82c9_0 3.3 MB conda-forge
tornado-5.1.1 |py27h1de35cc_1000 642 KB conda-forge
traitlets-4.3.3 | py27_0 128 KB conda-forge
vdt-0.4.3 | h6de7cb9_0 30 KB conda-forge
wcwidth-0.1.7 | py_1 17 KB conda-forge
webencodings-0.5.1 | py_1 12 KB conda-forge
wheel-0.33.6 | py27_0 35 KB conda-forge
xrootd-4.9.1 | py27hf280583_0 2.7 MB conda-forge
xz-5.2.4 | h1de35cc_1001 268 KB conda-forge
zeromq-4.3.2 | h6de7cb9_2 571 KB conda-forge
zipp-0.6.0 | py_0 7 KB conda-forge
zlib-1.2.11 | h0b31af3_1006 101 KB conda-forge
------------------------------------------------------------
Total: 636.8 MB
The following NEW packages will be INSTALLED:
afterimage conda-forge/osx-64::afterimage-1.21-h044d061_1002
appnope conda-forge/osx-64::appnope-0.1.0-py27_1000
attrs conda-forge/noarch::attrs-19.3.0-py_0
backports conda-forge/noarch::backports-1.0-py_2
backports.shutil_~ conda-forge/noarch::backports.shutil_get_terminal_size-1.0.0-py_3
backports_abc conda-forge/noarch::backports_abc-0.5-py_1
binutils conda-forge/osx-64::binutils-1.0.1-0
blas conda-forge/osx-64::blas-1.1-openblas
bleach conda-forge/noarch::bleach-3.1.0-py_0
bzip2 conda-forge/osx-64::bzip2-1.0.8-h0b31af3_2
c-compiler conda-forge/osx-64::c-compiler-1.0.1-h1de35cc_0
ca-certificates conda-forge/osx-64::ca-certificates-2019.11.28-hecc5488_0
cairo conda-forge/osx-64::cairo-1.16.0-he1c11cd_1002
cctools conda-forge/osx-64::cctools-895-h7512d6f_0
certifi conda-forge/osx-64::certifi-2019.11.28-py27_0
cfitsio conda-forge/osx-64::cfitsio-3.470-h389770f_2
clang conda-forge/osx-64::clang-4.0.1-h662ec87_0
clang_osx-64 conda-forge/osx-64::clang_osx-64-4.0.1-h1ce6c1d_17
clangxx conda-forge/osx-64::clangxx-4.0.1-hc9b4283_0
clangxx_osx-64 conda-forge/osx-64::clangxx_osx-64-4.0.1-h22b1bf0_17
compiler-rt conda-forge/osx-64::compiler-rt-4.0.1-h5487866_0
compilers conda-forge/osx-64::compilers-1.0.1-0
configparser conda-forge/osx-64::configparser-3.7.3-py27_1
contextlib2 conda-forge/noarch::contextlib2-0.6.0.post1-py_0
curl conda-forge/osx-64::curl-7.65.3-h22ea746_0
cxx-compiler conda-forge/osx-64::cxx-compiler-1.0.1-h04f5b5a_0
davix conda-forge/osx-64::davix-0.7.5-h7232a33_0
decorator conda-forge/noarch::decorator-4.4.1-py_0
defusedxml conda-forge/noarch::defusedxml-0.6.0-py_0
entrypoints conda-forge/osx-64::entrypoints-0.3-py27_1000
enum34 conda-forge/osx-64::enum34-1.1.6-py27_1002
fftw conda-forge/osx-64::fftw-3.3.8-mpi_mpich_h6e18f22_1009
fontconfig conda-forge/osx-64::fontconfig-2.13.1-h6b1039f_1001
fortran-compiler conda-forge/osx-64::fortran-compiler-1.0.1-h4f947d3_0
freetype conda-forge/osx-64::freetype-2.10.0-h24853df_1
fribidi conda-forge/osx-64::fribidi-1.0.5-h01d97ff_1002
functools32 conda-forge/noarch::functools32-3.2.3.2-py_3
futures conda-forge/osx-64::futures-3.3.0-py27_0
gdk-pixbuf conda-forge/osx-64::gdk-pixbuf-2.36.12-h284f8de_1003
gettext conda-forge/osx-64::gettext-0.19.8.1-h46ab8bc_1002
gfortran_osx-64 conda-forge/osx-64::gfortran_osx-64-4.8.5-h22b1bf0_8
giflib conda-forge/osx-64::giflib-5.1.7-h01d97ff_1
glew conda-forge/osx-64::glew-2.0.0-h0a44026_1002
glib conda-forge/osx-64::glib-2.58.3-h9d45998_1002
gobject-introspec~ conda-forge/osx-64::gobject-introspection-1.56.1-py27h64a7abb_1002
graphite2 conda-forge/osx-64::graphite2-1.3.13-h2098e52_1000
graphviz conda-forge/osx-64::graphviz-2.40.1-ha626266_1
gsl conda-forge/osx-64::gsl-2.5-ha2d443c_1
harfbuzz conda-forge/osx-64::harfbuzz-2.4.0-hd8d2a14_3
icu conda-forge/osx-64::icu-64.2-h6de7cb9_1
importlib_metadata conda-forge/osx-64::importlib_metadata-1.3.0-py27_0
ipaddress conda-forge/noarch::ipaddress-1.0.23-py_0
ipykernel conda-forge/osx-64::ipykernel-4.10.0-py27_0
ipyparallel conda-forge/osx-64::ipyparallel-6.2.4-py27_0
ipython conda-forge/osx-64::ipython-5.8.0-py27_0
ipython_genutils conda-forge/noarch::ipython_genutils-0.2.0-py_1
jinja2 conda-forge/noarch::jinja2-2.10.3-py_0
jpeg conda-forge/osx-64::jpeg-9c-h1de35cc_1001
jsonschema conda-forge/osx-64::jsonschema-3.2.0-py27_0
jupyter_client conda-forge/osx-64::jupyter_client-5.3.3-py27_1
jupyter_core conda-forge/osx-64::jupyter_core-4.6.1-py27_0
krb5 conda-forge/osx-64::krb5-1.16.3-hcfa6398_1001
ld64 conda-forge/osx-64::ld64-274.2-h7c2db76_0
libblas conda-forge/osx-64::libblas-3.8.0-11_openblas
libcblas conda-forge/osx-64::libcblas-3.8.0-11_openblas
libcroco conda-forge/osx-64::libcroco-0.6.13-hc484408_0
libcurl conda-forge/osx-64::libcurl-7.65.3-h16faf7d_0
libcxx pkgs/main/osx-64::libcxx-4.0.1-h579ed51_0
libcxxabi conda-forge/osx-64::libcxxabi-4.0.1-hebd6815_0
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi conda-forge/osx-64::libffi-3.2.1-h6de7cb9_1006
libgfortran conda-forge/osx-64::libgfortran-3.0.1-0
libiconv conda-forge/osx-64::libiconv-1.15-h01d97ff_1005
libopenblas pkgs/main/osx-64::libopenblas-0.3.6-hdc02c5d_2
libpng conda-forge/osx-64::libpng-1.6.37-h2573ce8_0
librsvg conda-forge/osx-64::librsvg-2.44.15-h90c2430_0
libsodium conda-forge/osx-64::libsodium-1.0.17-h01d97ff_0
libssh2 conda-forge/osx-64::libssh2-1.8.2-hcdc9a53_2
libtiff conda-forge/osx-64::libtiff-4.0.9-h79f4b77_1002
libxml2 conda-forge/osx-64::libxml2-2.9.10-h53d96d6_0
llvm conda-forge/osx-64::llvm-4.0.1-hc748206_0
llvm-lto-tapi conda-forge/osx-64::llvm-lto-tapi-4.0.1-h6701bc3_0
llvm-openmp conda-forge/osx-64::llvm-openmp-9.0.0-h40edb58_0
lz4 conda-forge/osx-64::lz4-2.2.1-py27he1520b0_0
lz4-c conda-forge/osx-64::lz4-c-1.8.3-h6de7cb9_1001
markupsafe conda-forge/osx-64::markupsafe-1.1.1-py27h0b31af3_0
metakernel conda-forge/noarch::metakernel-0.24.3-py_0
mistune conda-forge/osx-64::mistune-0.8.4-py27h0b31af3_1000
more-itertools conda-forge/noarch::more-itertools-5.0.0-py_0
mpi conda-forge/osx-64::mpi-1.0-mpich
mpich conda-forge/osx-64::mpich-3.2.1-ha90c164_1014
nbconvert conda-forge/osx-64::nbconvert-5.6.1-py27_0
nbformat conda-forge/noarch::nbformat-4.4.0-py_1
ncurses conda-forge/osx-64::ncurses-6.1-h0a44026_1002
notebook conda-forge/osx-64::notebook-5.7.8-py27_1
numpy conda-forge/osx-64::numpy-1.16.2-py27_blas_openblash486cb9f_0
openblas conda-forge/osx-64::openblas-0.3.3-hdc02c5d_1001
openssl conda-forge/osx-64::openssl-1.1.1d-h0b31af3_0
pandas conda-forge/osx-64::pandas-0.24.2-py27h86efe34_0
pandoc conda-forge/osx-64::pandoc-2.9-0
pandocfilters conda-forge/noarch::pandocfilters-1.4.2-py_1
pango conda-forge/osx-64::pango-1.42.4-h6691c8e_1
pathlib2 conda-forge/osx-64::pathlib2-2.3.5-py27_0
pcre conda-forge/osx-64::pcre-8.41-h0a44026_1003
pexpect conda-forge/osx-64::pexpect-4.7.0-py27_0
pickleshare conda-forge/osx-64::pickleshare-0.7.5-py27_1000
pip conda-forge/osx-64::pip-19.3.1-py27_0
pixman conda-forge/osx-64::pixman-0.38.0-h01d97ff_1003
portalocker conda-forge/osx-64::portalocker-1.5.2-py27_0
prometheus_client conda-forge/noarch::prometheus_client-0.7.1-py_0
prompt_toolkit conda-forge/noarch::prompt_toolkit-1.0.15-py_1
ptyprocess conda-forge/noarch::ptyprocess-0.6.0-py_1001
pygments conda-forge/noarch::pygments-2.5.2-py_0
pyrsistent conda-forge/osx-64::pyrsistent-0.15.6-py27h0b31af3_0
pythia8 conda-forge/osx-64::pythia8-8.240-py27h6de7cb9_2
python pkgs/main/osx-64::python-2.7.16-h97142e2_7
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2019.3-py_0
pyzmq conda-forge/osx-64::pyzmq-18.1.0-py27hee98d25_0
qt conda-forge/osx-64::qt-5.9.7-h8cf7e54_3
readline conda-forge/osx-64::readline-7.0-hcfe32e1_1001
root conda-forge/osx-64::root-6.18.00-py27h500fca7_17
root_numpy conda-forge/osx-64::root_numpy-4.8.0-py27haf112f3_2
root_pandas conda-forge/noarch::root_pandas-0.7.0-py_0
scandir conda-forge/osx-64::scandir-1.10.0-py27h0b31af3_0
scikit-learn conda-forge/osx-64::scikit-learn-0.20.4-py27_blas_openblashc6dc708_0
scipy conda-forge/osx-64::scipy-1.2.1-py27_blas_openblash486cb9f_0
send2trash conda-forge/noarch::send2trash-1.5.0-py_0
setuptools conda-forge/osx-64::setuptools-42.0.2-py27_0
simplegeneric conda-forge/noarch::simplegeneric-0.8.1-py_1
singledispatch conda-forge/osx-64::singledispatch-3.4.0.3-py27_1000
six conda-forge/osx-64::six-1.13.0-py27_0
sqlite pkgs/main/osx-64::sqlite-3.30.1-ha441bb4_0
tbb conda-forge/osx-64::tbb-2019.8-h770b8ee_0
tbb-devel conda-forge/osx-64::tbb-devel-2019.8-h770b8ee_0
terminado conda-forge/osx-64::terminado-0.8.3-py27_0
testpath conda-forge/noarch::testpath-0.4.4-py_0
tk conda-forge/osx-64::tk-8.6.10-hbbe82c9_0
tornado conda-forge/osx-64::tornado-5.1.1-py27h1de35cc_1000
traitlets conda-forge/osx-64::traitlets-4.3.3-py27_0
vdt conda-forge/osx-64::vdt-0.4.3-h6de7cb9_0
wcwidth conda-forge/noarch::wcwidth-0.1.7-py_1
webencodings conda-forge/noarch::webencodings-0.5.1-py_1
wheel conda-forge/osx-64::wheel-0.33.6-py27_0
xrootd conda-forge/osx-64::xrootd-4.9.1-py27hf280583_0
xz conda-forge/osx-64::xz-5.2.4-h1de35cc_1001
zeromq conda-forge/osx-64::zeromq-4.3.2-h6de7cb9_2
zipp conda-forge/noarch::zipp-0.6.0-py_0
zlib conda-forge/osx-64::zlib-1.2.11-h0b31af3_1006
Proceed ([y]/n)?
Downloading and Extracting Packages
clangxx_osx-64-4.0.1 | 146 KB | ##################################### | 100%
cfitsio-3.470 | 1.4 MB | ##################################### | 100%
jpeg-9c | 237 KB | ##################################### | 100%
more-itertools-5.0.0 | 44 KB | ##################################### | 100%
jsonschema-3.2.0 | 87 KB | ##################################### | 100%
bleach-3.1.0 | 110 KB | ##################################### | 100%
davix-0.7.5 | 1.5 MB | ##################################### | 100%
libxml2-2.9.10 | 1.2 MB | ##################################### | 100%
vdt-0.4.3 | 30 KB | ##################################### | 100%
nbconvert-5.6.1 | 487 KB | ##################################### | 100%
libcblas-3.8.0 | 10 KB | ##################################### | 100%
zeromq-4.3.2 | 571 KB | ##################################### | 100%
ld64-274.2 | 2.6 MB | ##################################### | 100%
gobject-introspectio | 1.2 MB | ##################################### | 100%
testpath-0.4.4 | 85 KB | ##################################### | 100%
gdk-pixbuf-2.36.12 | 568 KB | ##################################### | 100%
contextlib2-0.6.0.po | 12 KB | ##################################### | 100%
xrootd-4.9.1 | 2.7 MB | ##################################### | 100%
krb5-1.16.3 | 1.1 MB | ##################################### | 100%
sqlite-3.30.1 | 2.4 MB | ##################################### | 100%
notebook-5.7.8 | 5.9 MB | ##################################### | 100%
clang-4.0.1 | 73.7 MB | ##################################### | 100%
libblas-3.8.0 | 10 KB | ##################################### | 100%
cairo-1.16.0 | 1.3 MB | ##################################### | 100%
root-6.18.00 | 117.8 MB | ##################################### | 100%
lz4-c-1.8.3 | 139 KB | ##################################### | 100%
icu-64.2 | 12.3 MB | ##################################### | 100%
attrs-19.3.0 | 35 KB | ##################################### | 100%
afterimage-1.21 | 668 KB | ##################################### | 100%
pixman-0.38.0 | 611 KB | ##################################### | 100%
pythia8-8.240 | 25.8 MB | ##################################### | 100%
libtiff-4.0.9 | 542 KB | ##################################### | 100%
libcxx-4.0.1 | 717 KB | ##################################### | 100%
metakernel-0.24.3 | 179 KB | ##################################### | 100%
harfbuzz-2.4.0 | 1.2 MB | ##################################### | 100%
pathlib2-2.3.5 | 33 KB | ##################################### | 100%
root_pandas-0.7.0 | 2.3 MB | ##################################### | 100%
entrypoints-0.3 | 13 KB | ##################################### | 100%
ipaddress-1.0.23 | 19 KB | ##################################### | 100%
terminado-0.8.3 | 22 KB | ##################################### | 100%
libcurl-7.65.3 | 547 KB | ##################################### | 100%
gsl-2.5 | 2.7 MB | ##################################### | 100%
compiler-rt-4.0.1 | 963 KB | ##################################### | 100%
pip-19.3.1 | 1.9 MB | ##################################### | 100%
backports_abc-0.5 | 5 KB | ##################################### | 100%
python-dateutil-2.8. | 220 KB | ##################################### | 100%
markupsafe-1.1.1 | 24 KB | ##################################### | 100%
lz4-2.2.1 | 125 KB | ##################################### | 100%
tk-8.6.10 | 3.3 MB | ##################################### | 100%
traitlets-4.3.3 | 128 KB | ##################################### | 100%
glew-2.0.0 | 565 KB | ##################################### | 100%
portalocker-1.5.2 | 17 KB | ##################################### | 100%
ipyparallel-6.2.4 | 307 KB | ##################################### | 100%
cxx-compiler-1.0.1 | 4 KB | ##################################### | 100%
c-compiler-1.0.1 | 4 KB | ##################################### | 100%
enum34-1.1.6 | 57 KB | ##################################### | 100%
jupyter_client-5.3.3 | 129 KB | ##################################### | 100%
gfortran_osx-64-4.8. | 7.4 MB | ##################################### | 100%
wheel-0.33.6 | 35 KB | ##################################### | 100%
gettext-0.19.8.1 | 3.3 MB | ##################################### | 100%
jinja2-2.10.3 | 91 KB | ##################################### | 100%
llvm-4.0.1 | 136.7 MB | ##################################### | 100%
pytz-2019.3 | 237 KB | ##################################### | 100%
singledispatch-3.4.0 | 15 KB | ##################################### | 100%
numpy-1.16.2 | 4.1 MB | ##################################### | 100%
configparser-3.7.3 | 36 KB | ##################################### | 100%
libopenblas-0.3.6 | 8.5 MB | ##################################### | 100%
tbb-2019.8 | 157 KB | ##################################### | 100%
pandocfilters-1.4.2 | 9 KB | ##################################### | 100%
six-1.13.0 | 22 KB | ##################################### | 100%
nbformat-4.4.0 | 91 KB | ##################################### | 100%
mpi-1.0 | 4 KB | ##################################### | 100%
compilers-1.0.1 | 4 KB | ##################################### | 100%
openblas-0.3.3 | 17.6 MB | ##################################### | 100%
xz-5.2.4 | 268 KB | ##################################### | 100%
prompt_toolkit-1.0.1 | 154 KB | ##################################### | 100%
libcxxabi-4.0.1 | 149 KB | ##################################### | 100%
curl-7.65.3 | 125 KB | ##################################### | 100%
clangxx-4.0.1 | 10 KB | ##################################### | 100%
pandoc-2.9 | 21.1 MB | ##################################### | 100%
libgfortran-3.0.1 | 495 KB | ##################################### | 100%
qt-5.9.7 | 76.8 MB | ##################################### | 100%
pandas-0.24.2 | 10.0 MB | ##################################### | 100%
appnope-0.1.0 | 8 KB | ##################################### | 100%
wcwidth-0.1.7 | 17 KB | ##################################### | 100%
pickleshare-0.7.5 | 12 KB | ##################################### | 100%
libssh2-1.8.2 | 221 KB | ##################################### | 100%
simplegeneric-0.8.1 | 7 KB | ##################################### | 100%
libiconv-1.15 | 1.3 MB | ##################################### | 100%
scipy-1.2.1 | 15.8 MB | ##################################### | 100%
ipykernel-4.10.0 | 144 KB | ##################################### | 100%
fontconfig-2.13.1 | 270 KB | ##################################### | 100%
glib-2.58.3 | 3.1 MB | ##################################### | 100%
jupyter_core-4.6.1 | 70 KB | ##################################### | 100%
zlib-1.2.11 | 101 KB | ##################################### | 100%
pexpect-4.7.0 | 76 KB | ##################################### | 100%
certifi-2019.11.28 | 149 KB | ##################################### | 100%
libsodium-1.0.17 | 308 KB | ##################################### | 100%
setuptools-42.0.2 | 642 KB | ##################################### | 100%
clang_osx-64-4.0.1 | 145 KB | ##################################### | 100%
fortran-compiler-1.0 | 4 KB | ##################################### | 100%
backports.shutil_get | 7 KB | ##################################### | 100%
cctools-895 | 1.5 MB | ##################################### | 100%
ipython-5.8.0 | 1.0 MB | ##################################### | 100%
scandir-1.10.0 | 26 KB | ##################################### | 100%
tbb-devel-2019.8 | 726 KB | ##################################### | 100%
pygments-2.5.2 | 669 KB | ##################################### | 100%
send2trash-1.5.0 | 12 KB | ##################################### | 100%
functools32-3.2.3.2 | 15 KB | ##################################### | 100%
root_numpy-4.8.0 | 481 KB | ##################################### | 100%
importlib_metadata-1 | 39 KB | ##################################### | 100%
ncurses-6.1 | 1.3 MB | ##################################### | 100%
blas-1.1 | 1 KB | ##################################### | 100%
tornado-5.1.1 | 642 KB | ##################################### | 100%
freetype-2.10.0 | 894 KB | ##################################### | 100%
futures-3.3.0 | 25 KB | ##################################### | 100%
mpich-3.2.1 | 4.1 MB | ##################################### | 100%
libffi-3.2.1 | 43 KB | ##################################### | 100%
librsvg-2.44.15 | 2.2 MB | ##################################### | 100%
binutils-1.0.1 | 6 KB | ##################################### | 100%
zipp-0.6.0 | 7 KB | ##################################### | 100%
ptyprocess-0.6.0 | 15 KB | ##################################### | 100%
openssl-1.1.1d | 1.9 MB | ##################################### | 100%
llvm-openmp-9.0.0 | 266 KB | ##################################### | 100%
mistune-0.8.4 | 52 KB | ##################################### | 100%
prometheus_client-0. | 38 KB | ##################################### | 100%
graphite2-1.3.13 | 84 KB | ##################################### | 100%
python-2.7.16 | 9.2 MB | ##################################### | 100%
llvm-lto-tapi-4.0.1 | 11.7 MB | ##################################### | 100%
backports-1.0 | 4 KB | ##################################### | 100%
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graphviz-2.40.1 | 6.5 MB | ##################################### | 100%
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giflib-5.1.7 | 140 KB | ##################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate my-root_pandas-env
#
# To deactivate an active environment, use
#
# $ conda deactivate
$ conda activate my-root_pandas-env
WARNING: Compiling likely won't work unless you download the macOS 10.9 SDK and set CONDA_BUILD_SYSROOT.
You can probably ignore this warning and just omit + or ++ when executing ROOT macros.In [1]: import ROOT
In [2]: rdf = ROOT.RDataFrame(10).Define('e', 'rdfentry_')
In [3]: asdict = rdf.AsNumpy()
In [4]: import pandas as pd
In [5]: df = pd.DataFrame.from_dict(asdict)
In [6]: import root_pandas as rp
In [7]: rp.to_root(df, 'temp.root', 'myTree')
/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_tree.py:575: UserWarning: converter for dtype('O') is not implemented (skipping)
cobj = _librootnumpy.array2tree_toCObj(arr, name=name, tree=incobj)
*** Break *** segmentation violation
[/usr/lib/system/libsystem_platform.dylib] _sigtramp (no debug info)
[<unknown binary>] (no debug info)
[/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_librootnumpy.so] __pyx_f_13_librootnumpy_array2tree(tagPyArrayObject_fields*, __pyx_opt_args_13_librootnumpy_array2tree*) (no debug info)
[/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_librootnumpy.so] __pyx_pw_13_librootnumpy_17array2tree_toCObj(_object*, _object*, _object*) (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] function_call (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyObject_Call (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCode (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyRun_FileExFlags (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyRun_SimpleFileExFlags (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] Py_Main (no debug info)
[/usr/lib/system/libdyld.dylib] start (no debug info)
[<unknown binary>] (no debug info)That said, I'm not sure it's picking up the environment version of ROOT. You can see above that it installs ROOT 6.18.00, but if I check the version in a python session, it still gives 6.19/01, which is the version I build.
pip install root_numpy --no-binary root_numpy --upgrade also does not seem to work:
$ pip install root_numpy --no-binary root_numpy --upgrade
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Requirement already up-to-date: root_numpy in ./anaconda2/lib/python2.7/site-packages (4.8.0)In [1]: import ROOT
In [2]: rdf = ROOT.RDataFrame(10).Define('e', 'rdfentry_')
In [3]: asdict = rdf.AsNumpy()
In [4]: import pandas as pd
In [5]: df = pd.DataFrame.from_dict(asdict)
In [6]: import root_pandas as rp
In [7]: rp.to_root(df, 'temp.root', 'myTree')
/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_tree.py:575: UserWarning: converter for dtype('O') is not implemented (skipping)
cobj = _librootnumpy.array2tree_toCObj(arr, name=name, tree=incobj)
*** Break *** segmentation violation
[/usr/lib/system/libsystem_platform.dylib] _sigtramp (no debug info)
[<unknown binary>] (no debug info)
[/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_librootnumpy.so] __pyx_f_13_librootnumpy_array2tree(tagPyArrayObject_fields*, __pyx_opt_args_13_librootnumpy_array2tree*) (no debug info)
[/Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/_librootnumpy.so] __pyx_pw_13_librootnumpy_17array2tree_toCObj(_object*, _object*, _object*) (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] function_call (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyObject_Call (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] fast_function (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalFrameEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCodeEx (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyEval_EvalCode (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyRun_FileExFlags (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] PyRun_SimpleFileExFlags (no debug info)
[/Users/michael/anaconda2/lib/libpython2.7.dylib] Py_Main (no debug info)
[/usr/lib/system/libdyld.dylib] start (no debug info)
[<unknown binary>] (no debug info)I'd take a look at env, as I suspect you're running the thisroot.sh script somewhere which will set PYTHONPATH. You can check which ROOT installation you're using with:
print(ROOT.__file__)I don't think it's an issue but do you need to specify python=2.7.16 instead of python=2.7?
goi42
commented
4 years ago Yup, you're right; python path got set. Unsetting it in that conda environment solves the issue.
It would be convenient to be able to point root_pandas to the build of ROOT I typically use, but this resolves the issue. Thanks.
chrisburr
commented
4 years ago I've just re-read your previous message and realised I should have suggested:
pip install root_numpy --no-binary root_numpy --force-reinstall
goi42
commented
4 years ago It does not seem to care for that command:
$ pip install root_numpy --no-binary root_numpy --force-reinstall
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting root_numpy
Using cached https://files.pythonhosted.org/packages/d5/5f/82f5111c22599676eb8b5f9b1bf85c38dcc7995d52cd6b4a8f5f5caa4659/root_numpy-4.8.0.tar.gz
Skipping bdist_wheel for root-numpy, due to binaries being disabled for it.
Installing collected packages: root-numpy
Found existing installation: root-numpy 4.8.0
Uninstalling root-numpy-4.8.0:
Successfully uninstalled root-numpy-4.8.0
Running setup.py install for root-numpy ... error
ERROR: Command errored out with exit status 1:
command: /Users/michael/anaconda2/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-install-65QJdq/root-numpy/setup.py'"'"'; __file__='"'"'/private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-install-65QJdq/root-numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-record-qZ2QVY/install-record.txt --single-version-externally-managed --compile
cwd: /private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-install-65QJdq/root-numpy/
Complete output (70 lines):
running install
_
_ __ ___ ___ | |_ _ __ _ _ _ __ ___ _ __ _ _
| '__/ _ \ / _ \| __| | '_ \| | | | '_ ` _ \| '_ \| | | |
| | | (_) | (_) | |_ | | | | |_| | | | | | | |_) | |_| |
|_| \___/ \___/ \__|___|_| |_|\__,_|_| |_| |_| .__/ \__, | 4.8.0
|_____| |_| |___/
writing 'root_numpy/config.json'
running build
running build_py
creating build
creating build/lib.macosx-10.6-x86_64-2.7
creating build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_graph.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_sample.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_warnings.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_array.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/setup_utils.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/info.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_matrix.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_hist.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_tree.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_utils.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
copying root_numpy/_evaluate.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
creating build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_utils.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_hist.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_tree.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_sample.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_array.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
copying root_numpy/tests/test_evaluate.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tests
creating build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
creating build/lib.macosx-10.6-x86_64-2.7/root_numpy/extern
copying root_numpy/extern/ordereddict.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/extern
copying root_numpy/extern/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/extern
copying root_numpy/extern/six.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/extern
creating build/lib.macosx-10.6-x86_64-2.7/root_numpy/tmva
copying root_numpy/tmva/_data.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tmva
copying root_numpy/tmva/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tmva
copying root_numpy/tmva/tests.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tmva
copying root_numpy/tmva/_evaluate.py -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/tmva
copying root_numpy/testdata/directories.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/object2.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/struct.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/test.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/vary1.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/single1.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/fixed2.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/trees.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/ntuple.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/fixed1.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/vary2.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/string.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/single2.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/vector.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/testdata/object1.root -> build/lib.macosx-10.6-x86_64-2.7/root_numpy/testdata
copying root_numpy/config.json -> build/lib.macosx-10.6-x86_64-2.7/root_numpy
running build_ext
building 'root_numpy._librootnumpy' extension
creating build/temp.macosx-10.6-x86_64-2.7
creating build/temp.macosx-10.6-x86_64-2.7/root_numpy
creating build/temp.macosx-10.6-x86_64-2.7/root_numpy/src
gcc -fno-strict-aliasing -I/Users/michael/anaconda2/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Iroot_numpy/src -I/Users/michael/anaconda2/include/python2.7 -I/Users/michael/anaconda2/lib/python2.7/site-packages/numpy/core/include -c root_numpy/src/_librootnumpy.cpp -o build/temp.macosx-10.6-x86_64-2.7/root_numpy/src/_librootnumpy.o -stdlib=libc++ -pthread -std=c++11 -m64 -I/Applications/root_build/include -Wno-unused-function -Wno-write-strings
clang: error: invalid deployment target for -stdlib=libc++ (requires OS X 10.7 or later)
error: command 'gcc' failed with exit status 1
----------------------------------------
Rolling back uninstall of root-numpy
Moving to /Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy-4.8.0.dist-info/
from /Users/michael/anaconda2/lib/python2.7/site-packages/~oot_numpy-4.8.0.dist-info
Moving to /Users/michael/anaconda2/lib/python2.7/site-packages/root_numpy/
from /Users/michael/anaconda2/lib/python2.7/site-packages/~oot_numpy
ERROR: Command errored out with exit status 1: /Users/michael/anaconda2/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-install-65QJdq/root-numpy/setup.py'"'"'; __file__='"'"'/private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-install-65QJdq/root-numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/zq/pwp8f9td4_9cb_b28mhfpffr0000gp/T/pip-record-qZ2QVY/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.It complains I need OS X 10.7 or later, though I am running 10.15.1.
to_rootfails:read_rootfails:macOS 10.15.1 Python 2.7.16 IPython 5.8.0