Open ramyadurvasula opened 5 years ago
lmcinnes
commented
5 years ago This is due to some upgrades in scikit-learn and how stringent they are in compatibility requirements. I haven't gotten around to fixing it yet, but technically it isn't an issue unless you are relying on very specific sklearn functionality.
ramyadurvasula
commented
5 years ago Thanks for your response. Is there some other configuration I can use to run hdbscan?
Akshatcobalt
commented
5 years ago Hey any workaround for this error? I am using latest version of Scikit-Learn.
taochengla
commented
5 years ago Look at the code. You create python file named as hdbscan.py, that's the root cause. It is trying to import the module you created.
File "/Users/ramyadurvasula/Desktop/aavia/matrix algorithm/**hdbscan.py**", line 29, in clusterer = hdbscan.HDBSCAN(min_cluster_size=5, gen_min_span_tree=True) AttributeError: module 'hdbscan' has no attribute 'HDBSCAN'
If you face same issue later. You may run `print(help('hdbscan'))' to check the module information. Replace hdbscan with any module name.
Hi,
I'm a new user, and I installed hdbscan using pip install. I tried to run it on OSX 10.11 (El Capitan) and later on macOS 10.14 (Mojave), and I received an error saying module 'hdbscan' has no attribute 'HDBSCAN'. The full output is below, pasted from my most recent run on Mojave, although I believe it was the same for both operating systems.
====================================================================== ERROR: Failure: AttributeError (module 'hdbscan' has no attribute 'HDBSCAN')
Traceback (most recent call last): File "/anaconda3/lib/python3.7/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/anaconda3/lib/python3.7/site-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/anaconda3/lib/python3.7/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/anaconda3/lib/python3.7/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/anaconda3/lib/python3.7/imp.py", line 235, in load_module return load_source(name, filename, file) File "/anaconda3/lib/python3.7/imp.py", line 172, in load_source module = _load(spec) File "", line 696, in _load
File "", line 677, in _load_unlocked
File "", line 728, in exec_module
File "", line 219, in _call_with_frames_removed
File "/Users/ramyadurvasula/Desktop/aavia/matrix algorithm/hdbscan.py", line 29, in
clusterer = hdbscan.HDBSCAN(min_cluster_size=5, gen_min_span_tree=True)
AttributeError: module 'hdbscan' has no attribute 'HDBSCAN'
-------------------- >> begin captured logging << --------------------
matplotlib: DEBUG: $HOME=/Users/ramyadurvasula
matplotlib: DEBUG: matplotlib data path /anaconda3/lib/python3.7/site-packages/matplotlib/mpl-data
matplotlib: DEBUG: loaded rc file /anaconda3/lib/python3.7/site-packages/matplotlib/mpl-data/matplotlibrc
matplotlib: DEBUG: matplotlib version 2.2.3
matplotlib: DEBUG: interactive is False
matplotlib: DEBUG: platform is darwin
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matplotlib: DEBUG: CACHEDIR=/Users/ramyadurvasula/.matplotlib
matplotlib.font_manager: DEBUG: Using fontManager instance from /Users/ramyadurvasula/.matplotlib/fontList.json
matplotlib.backends: DEBUG: backend MacOSX version unknown
--------------------- >> end captured logging << ---------------------
Ran 1 test in 0.002s
FAILED (errors=1)
Thanks!