Open karanphil opened 2 weeks ago
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Quick description
Here is a script that computes a
fixel_density_maps
by associating each segment of streamlines in each voxel to one of the fixels. In other words, you give peaks and a list of bundles (.trk) as input, and it computes the fraction of each bundle per peak, for every voxel. It uses either the streamline count or some streamline weight in data_per_streamline, to compute the density of bundles. From thefixel_density_maps
, we also get thefixel_density_masks
(masked version of the map using thresholds), thevoxel_density_maps
, thevoxel_density_masks
, thenb_bundles_per_fixel
and thenb_bundles_per_voxel
. Please read the documentation of the script for more info.@mdesco, @frheault this is the script we talked about! I would recommend using the default values to start with. So simply give the peaks and --in_bundles.
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Provide data, screenshots, command line to test (if relevant)
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