scilus / scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
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NF - add PTT options to the local tracking script #976

Closed gabknight closed 5 months ago

gabknight commented 5 months ago

Quick description

PR #750 forgot to include the PTT options for the script scil_tracking_local.py (issue #952). This PR fixed the issue.

Type of change

Check the relevant options.

Provide data, screenshots, command line to test (if relevant)

scil_tracking_local.py disco/fODF.nii.gz disco/DiSCo1_ROIs.nii.gz disco/mask.nii.gz scil_test2.tck --step 0.2 --theta 20 --npv 1 --algo ptt --sphere repulsion724 -f --probe_quality 5 --probe_length 2

Checklist

codecov[bot] commented 5 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 68.18%. Comparing base (1996cc8) to head (8d72832). Report is 1 commits behind head on master.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #976 +/- ## ========================================== + Coverage 68.15% 68.18% +0.03% ========================================== Files 399 399 Lines 21365 21366 +1 Branches 3229 3229 ========================================== + Hits 14561 14569 +8 + Misses 5500 5493 -7 Partials 1304 1304 ``` | [Components](https://app.codecov.io/gh/scilus/scilpy/pull/976/components?src=pr&el=components&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scilus) | Coverage Δ | | |---|---|---| | [Scripts](https://app.codecov.io/gh/scilus/scilpy/pull/976/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scilus) | `69.20% <100.00%> (+<0.01%)` | :arrow_up: | | [Library](https://app.codecov.io/gh/scilus/scilpy/pull/976/components?src=pr&el=component&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scilus) | `66.65% <100.00%> (+0.08%)` | :arrow_up: |
pep8speaks commented 5 months ago

Hello @gabknight, Thank you for updating !

There are currently no PEP 8 issues detected in this Pull Request. Cheers! :beers:

Comment last updated at 2024-04-17 17:16:17 UTC