scipion-em / scipion-em-imod

Plugin to use some of the Tomography tools from IMOD in Scipion
GNU General Public License v3.0
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enhancing use and helps #260

Closed Vilax closed 5 months ago

Vilax commented 5 months ago

Help of the protocols were added.

Help of the parameters was enhanced

Patch tracking is added as a new feature Trimming option in fiducial model are added

The order of the parameters in the forms was slightly modify according to the user actions

azazellochg commented 5 months ago

Good, we follow user wish then :)

On Thu, 18 Apr 2024, 14:27 Vilax, @.***> wrote:

@.**** commented on this pull request.

In imod/protocols/protocol_fiducialAlignment.py https://github.com/scipion-em/scipion-em-imod/pull/260#discussion_r1570753183 :

@@ -136,14 +199,19 @@ def _defineParams(self, form): default=3, label='Rotation solution type', display=params.EnumParam.DISPLAY_HLIST,

  • help='Type of rotation solution.')
  • help='Type of rotation solution: See rotOption in tiltalign IMOD command \n'

I had the same question in this protocol, hehehe so I took a few users of tomo users of our center and the facility. The answer of unanimous, they prefer this choice display instead of the combo. The reason: it looks more close to IMOD, and they prefer to see all options. Them, I asked the same for tilt series normalization and tomogram normalization. In those protocols hardly ever they change the choice, so the display_combo was ok.

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