Plugin unusable (invisible in protocol search)

[TomCrey]

Hello, I've just installed Scipion on a new machine (I've been using Scipion for a few months on other machines without any problems) and I've installed several plugins, including Motioncorr. However, it's the only one that's marked as installed when I do: scipion3 installp --help (the version indicated is 3.16.2) but when I do Ctrl+f to add the protocol, it's nowhere to be found... I've already tried deleting the plugin and installing earlier versions, but nothing changes. I've also tried redoing the entire Scipion installation, but to no avail... I've also run the 2 tests proposed on GitHub, I'm posting copies of my temrinal below. I hope you can help me.

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(base) jd250937@gre074125:~$ scipion3 test motioncorr.tests.test_protocols_motioncor.TestMotioncorAlignMovies Scipion v3.4.0 - Eugenius Scanning tests... Loading test/s ['motioncorr.tests.test_protocols_motioncor.TestMotioncorAlignMovies'] [ FAILED ] _FailedTest.tests

Traceback (most recent call last): File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 60, in testPartExecutor yield File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 676, in run self._callTestMethod(testMethod) File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 633, in _callTestMethod method() File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/loader.py", line 34, in testFailure raise self._exception ImportError: Failed to import test module: tests Traceback (most recent call last): File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/loader.py", line 154, in loadTestsFromName module = import(module_name) File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/tests/init.py", line 3, in from .test_protocols_motioncor import TestMotioncorAlignMovies File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/tests/test_protocols_motioncor.py", line 36, in from ..protocols import ProtMotionCorr File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/protocols/init.py", line 30, in from .protocol_motioncorr_tasks import ProtMotionCorrTasks File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/protocols/protocol_motioncorr_tasks.py", line 34, in from emtools.utils import Timer, Pipeline ImportError: cannot import name 'Pipeline' from 'emtools.utils' (/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/emtools/utils/init.py)

[==========] run 1 tests (0.000 secs)

[ FAILED ] 1 tests

[ PASSED ] 0 tests

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(base) jd250937@gre074125:~$ scipion3 test motioncorr.tests.test_protocols_tomo.TestMotioncorTiltSeriesAlignMovies Scipion v3.4.0 - Eugenius Scanning tests... Loading test/s ['motioncorr.tests.test_protocols_tomo.TestMotioncorTiltSeriesAlignMovies'] [ FAILED ] _FailedTest.tests

Traceback (most recent call last): File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 60, in testPartExecutor yield File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 676, in run self._callTestMethod(testMethod) File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/case.py", line 633, in _callTestMethod method() File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/loader.py", line 34, in testFailure raise self._exception ImportError: Failed to import test module: tests Traceback (most recent call last): File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/unittest/loader.py", line 154, in loadTestsFromName module = import(module_name) File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/tests/init.py", line 3, in from .test_protocols_motioncor import TestMotioncorAlignMovies File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/tests/test_protocols_motioncor.py", line 36, in from ..protocols import ProtMotionCorr File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/protocols/init.py", line 30, in from .protocol_motioncorr_tasks import ProtMotionCorrTasks File "/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/motioncorr/protocols/protocol_motioncorr_tasks.py", line 34, in from emtools.utils import Timer, Pipeline ImportError: cannot import name 'Pipeline' from 'emtools.utils' (/homelocal/jd250937/miniconda3/envs/scipion3/lib/python3.8/site-packages/emtools/utils/init.py)

[==========] run 1 tests (0.000 secs)

[ FAILED ] 1 tests

[ PASSED ] 0 tests

[rdrighetto]

+1 having the same issue

[azazellochg]

Just fixed it in devel and production. Please update to 3.16.3