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scipion-em / scipion-em-relion

Plugin to use Relion SPA programs within the Scipion framework
GNU General Public License v3.0
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symmetry expansion broken links for images #372

Open pconesa opened 1 year ago

pconesa commented 1 year ago

hi, this has happened to one of our users. He moved the project to another machine and images where gone.

The reason is here: image

fileName points to the "input" folder, which is an absolute link to another runs folder

image

Probably making the link relative will fix it or in the sqlite save the actual path removing "input" folder from the equation.

delarosatrevin commented 1 year ago

Yes, if it is a link to another runs location a relative link might be better

azazellochg commented 1 year ago

https://www3.mrc-lmb.cam.ac.uk/relion/index.php/FAQs#What_is_the_right_way_to_import_files_outside_the_project_directory.3F "Symbolic links to somewhere outside the project directory must be by an absolute path. "

azazellochg commented 1 year ago

After moving the project you must re-create the links