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scipion-em / scipion-em-susantomo

Plugin to use SUSAN within the Scipion framework

GNU General Public License v3.0

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Open azazellochg opened 2 years ago

azazellochg commented 2 years ago

[x] input tomo mrc stack has to be float32
[x] scipion coord/alignment -> tbl
[x] basic viewer
[x] protocol to make subsets by CC or ref num
[x] continue mode
[ ] add export coords protocol (update positions with shifts)
[x] add params to MRA: denoise, 2d refinement
[ ] save ptcl alignment info: susan ptclsraw -> scipion
[ ] replace matrix2eulerAngles (see https://github.com/scipion-em/scipion-em-continuousflex/issues/148)

MohamadHarastani commented 1 year ago

Hi @azazellochg By chance I saw you linked the issue with matrix2eulerAngles. Give a try this solution:

from scipy.spatial.transform import Rotation
rot, tilt, psi = Rotation.from_matrix(T).inv().as_euler('ZYZ', degrees=True)

Cheers