scivision-gallery / cryoEM-object-detection

A notebook demonstrating object detection in cryoEM micrographs
MIT License
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Binder fails to launch #4

Open Eric-Kobayashi opened 2 years ago

Eric-Kobayashi commented 2 years ago

When clicking the Binder link at the ReadMe frontpage, this error occurs when building the docker image:

Step 40/51 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
 ---> [Warning] Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
 ---> Running in 11f06494676f

Looking for: ['abseil-cpp=20210324.2', 'absl-py=1.0.0', 'aiohttp=3.8.1', 'aiosignal=1.2.0', 'aom=3.3.0', 'appdirs=1.4.4', 'argon2-cffi=21.3.0', 'argon2-cffi-bindings=21.2.0', 'asciitree=0.3.3', 'asttokens=2.0.5', 'astunparse=1.6.3', 'async-timeout=4.0.2', 'attrs=21.4.0', 'backcall=0.2.0', 'backports=1.0', 'backports.functools_lru_cache=1.6.4', 'beautifulsoup4=4.10.0', 'bleach=4.1.0', 'blinker=1.4', 'blosc=1.21.0', 'bokeh=2.4.2', 'brotli=1.0.9', 'brotli-bin=1.0.9', 'brotlipy=0.7.0', 'brunsli=0.1', 'bzip2=1.0.8', 'c-ares=1.18.1', 'c-blosc2=2.0.4', 'ca-certificates=2022.2.1', 'cached-property=1.5.2', 'cached_property=1.5.2', 'cachetools=4.2.4', 'certifi=2021.10.8', 'cffi=1.15.0', 'cfitsio=4.0.0', 'cftime=1.6.0', 'charls=2.3.4', 'charset-normalizer=2.0.12', 'click=8.0.4', 'cloudpickle=2.0.0', 'cryptography=36.0.1', 'curl=7.82.0', 'cycler=0.11.0', 'cytoolz=0.11.2', 'dask=2022.2.1', 'dask-core=2022.2.1', 'dbus=1.13.6', 'debugpy=1.5.1', 'decorator=5.1.1', 'defusedxml=0.7.1', 'distributed=2022.2.1', 'entrypoints=0.4', 'executing=0.8.3', 'exifread=2.3.2', 'expat=2.4.7', 'fasteners=0.17.3', 'flit-core=3.7.1', 'fonttools=4.30.0', 'freetype=2.10.4', 'frozenlist=1.3.0', 'fsspec=2022.2.0', 'gast=0.4.0', 'gettext=0.19.8.1', 'giflib=5.2.1', 'google-auth=1.35.0', 'google-auth-oauthlib=0.4.6', 'google-pasta=0.2.0', 'grpc-cpp=1.42.0', 'grpcio=1.42.0', 'h5py=3.6.0', 'hdf4=4.2.15', 'hdf5=1.12.1', 'heapdict=1.0.1', 'icu=69.1', 'idna=3.3', 'imagecodecs=2022.2.22', 'imageio=2.16.1', 'importlib-metadata=4.11.3', 'importlib_metadata=4.11.3', 'importlib_resources=5.4.0', 'intake=0.6.5', 'ipykernel=6.9.1', 'ipython=8.1.1', 'ipython_genutils=0.2.0', 'ipywidgets=7.6.5', 'jbig=2.1', 'jedi=0.18.1', 'jinja2=3.0.3', 'jpeg=9e', 'jsonschema=4.4.0', 'jupyter=1.0.0', 'jupyter_client=7.1.2', 'jupyter_console=6.4.3', 'jupyter_core=4.9.2', 'jupyterlab_pygments=0.1.2', 'jupyterlab_widgets=1.0.2', 'jxrlib=1.1', 'keras=2.7.0', 'keras-preprocessing=1.1.2', 'kiwisolver=1.4.0', 'krb5=1.19.3', 'lcms2=2.12', 'lerc=3.0', 'libaec=1.0.6', 'libavif=0.9.3', 'libblas=3.9.0', 'libbrotlicommon=1.0.9', 'libbrotlidec=1.0.9', 'libbrotlienc=1.0.9', 'libcblas=3.9.0', 'libclang=13.0.1', 'libcurl=7.82.0', 'libcxx=13.0.1', 'libdeflate=1.10', 'libedit=3.1.20191231', 'libev=4.33', 'libffi=3.4.2', 'libglib=2.70.2', 'libiconv=1.16', 'liblapack=3.9.0', 'libllvm13=13.0.1', 'libnetcdf=4.8.1', 'libnghttp2=1.47.0', 'libopenblas=0.3.18', 'libpng=1.6.37', 'libpq=14.2', 'libprotobuf=3.19.4', 'libsodium=1.0.18', 'libssh2=1.10.0', 'libtiff=4.3.0', 'libwebp=1.2.2', 'libwebp-base=1.2.2', 'libxcb=1.13', 'libzip=1.8.0', 'libzlib=1.2.11', 'libzopfli=1.0.3', 'llvm-openmp=13.0.1', 'locket=0.2.0', 'lz4-c=1.9.3', 'markdown=3.3.6', 'markupsafe=2.1.1', 'matplotlib=3.5.1', 'matplotlib-base=3.5.1', 'matplotlib-inline=0.1.3', 'mistune=0.8.4', 'msgpack-python=1.0.3', 'multidict=6.0.2', 'munkres=1.1.4', 'mysql-common=8.0.28', 'mysql-libs=8.0.28', 'nbclient=0.5.13', 'nbconvert=6.4.4', 'nbformat=5.2.0', 'ncurses=6.3', 'nest-asyncio=1.5.4', 'netcdf4=1.5.8', 'networkx=2.7.1', 'notebook=6.4.10', 'nspr=4.32', 'nss=3.74', 'numcodecs=0.9.1', 'numpy=1.22.3', 'oauthlib=3.2.0', 'openjpeg=2.4.0', 'openssl=1.1.1m', 'opt_einsum=3.3.0', 'packaging=21.3', 'pandas=1.4.1', 'pandoc=2.17.1.1', 'pandocfilters=1.5.0', 'parso=0.8.3', 'partd=1.2.0', 'pcre=8.45', 'pexpect=4.8.0', 'pickleshare=0.7.5', 'pillow=9.0.1', 'pip=22.0.4', 'prometheus_client=0.13.1', 'prompt-toolkit=3.0.27', 'prompt_toolkit=3.0.27', 'protobuf=3.19.4', 'psutil=5.9.0', 'pthread-stubs=0.4', 'ptyprocess=0.7.0', 'pure_eval=0.2.2', 'pyasn1=0.4.8', 'pyasn1-modules=0.2.7', 'pycparser=2.21', 'pygments=2.11.2', 'pyjwt=2.3.0', 'pyopenssl=22.0.0', 'pyparsing=3.0.7', 'pyqt=5.12.3', 'pyqt-impl=5.12.3', 'pyqt5-sip=4.19.18', 'pyqtchart=5.12', 'pyqtwebengine=5.12.1', 'pyrsistent=0.18.1', 'pysocks=1.7.1', 'python=3.9.10', 'python-dateutil=2.8.2', 'python-flatbuffers=2.0', 'python_abi=3.9', 'pytz=2021.3', 'pyu2f=0.1.5', 'pywavelets=1.3.0', 'pyyaml=6.0', 'pyzmq=22.3.0', 'qt=5.12.9', 'qtconsole=5.2.2', 'qtconsole-base=5.2.2', 'qtpy=2.0.1', 're2=2021.11.01', 'readline=8.1', 'requests=2.27.1', 'requests-oauthlib=1.3.1', 'rsa=4.8', 'scikit-image=0.19.2', 'scipy=1.8.0', 'send2trash=1.8.0', 'setuptools=59.8.0', 'six=1.16.0', 'snappy=1.1.8', 'sortedcontainers=2.4.0', 'soupsieve=2.3.1', 'sqlite=3.37.1', 'stack_data=0.2.0', 'tblib=1.7.0', 'tensorboard=2.6.0', 'tensorboard-data-server=0.6.0', 'tensorboard-plugin-wit=1.8.1', 'tensorflow=2.7.0', 'tensorflow-base=2.7.0', 'tensorflow-estimator=2.7.0', 'termcolor=1.1.0', 'terminado=0.13.3', 'testpath=0.6.0', 'tifffile=2022.2.9', 'tk=8.6.12', 'toolz=0.11.2', 'tornado=6.1', 'traitlets=5.1.1', 'typing-extensions=4.1.1', 'typing_extensions=4.1.1', 'tzdata=2021e', 'unicodedata2=14.0.0', 'urllib3=1.26.8', 'wcwidth=0.2.5', 'webencodings=0.5.1', 'werkzeug=2.0.3', 'wheel=0.37.1', 'widgetsnbextension=3.5.2', 'wrapt=1.14.0', 'xarray=2022.3.0', 'xorg-libxau=1.0.9', 'xorg-libxdmcp=1.1.3', 'xz=5.2.5', 'yaml=0.2.5', 'yarl=1.7.2', 'zarr=2.11.1', 'zeromq=4.3.4', 'zfp=0.5.5', 'zict=2.1.0', 'zipp=3.7.0', 'zlib=1.2.11', 'zstd=1.5.2']
Encountered problems while solving:
  - package nbconvert-6.4.4-py310hff52083_0 requires python_abi 3.10.* *_cp310, but none of the providers can be installed

pkgs/main/noarch          
pkgs/r/linux-64           
pkgs/r/noarch             
pkgs/main/linux-64        
conda-forge/noarch        
conda-forge/linux-64      
time: 27.907
Removing intermediate container 8eaa9a6d1b0a
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1Built image, launching...
Failed to connect to event stream