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scottgroup / snoGloBe

snoGloBe predicts both canonical and noncanonical box C/D snoRNA-RNA interactions using a gradient boosting classifier
GNU General Public License v3.0
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regions of interest in the output file #2

Open vetmohit89 opened 1 year ago

vetmohit89 commented 1 year ago

Thank you for creating the snoGlobe tool. It has made easier to find the potential interactions between snoRNA and target RNA. I am currently using a DNA fasta file from Ensembl to identify possible matches with snoRNA, however, the information about the exact region of the match is not available in the output file. Would it be possible if you please push another small feature to the snoGlobe.py script that provides additional information about the region (CDS or five_prime_utr or three_prime_utr) of potential interaction?

Gabrielle-DF commented 1 year ago

We will consider adding this feature in a future version. In the meantime, you can get the information by using bedtools intersect with your output file and your gtf.