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scoutzxb / CscoreTool

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Almost all positive value on one chromosome #10

Open yanchunzhang opened 3 years ago

yanchunzhang commented 3 years ago

Hi, will the interchromosomal interactions/contacts affect the csocre within one chromosome? Or should I better remove those inter-chromosomal counts when calculate the cscore within one single chromosome?

And another question is I got an unexpected result that the score on one chromosome are mostly all positive, do you think what may be the reason causing this?

Thank you! Yanchun

scoutzxb commented 3 years ago

No, they are automatically filtered out.

Sent from my iPhone

On Jan 13, 2021, at 12:13 PM, Yanchun Zhang notifications@github.com wrote:

 Hi, will the interchromosomal interactions/contacts affect the csocre within one chromosome? Or should I better remove those inter-chromosomal counts when calculate the cscore within one single chromosome?

Thank you! Yanchun

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.

yanchunzhang commented 3 years ago

No, they are automatically filtered out. … Sent from my iPhone On Jan 13, 2021, at 12:13 PM, Yanchun Zhang @.***> wrote:  Hi, will the interchromosomal interactions/contacts affect the csocre within one chromosome? Or should I better remove those inter-chromosomal counts when calculate the cscore within one single chromosome? Thank you! Yanchun — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.

Thank you for your reply! So do you have any idea or comments on why I got alomost all positive or negative Cscore value on one chromosome?