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scoutzxb / CscoreTool

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libgomp: Thread creation failed: Resource temporarily unavailable #11

Open Aannaw opened 2 years ago

Aannaw commented 2 years ago

Hello, Professor I am running CscoreTool with the command CscoreTool1.1 /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/Ma6.bed /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/input.summary 1 1000000 Chr1. But after running several minutes, the task failed with the err log: libgomp: Thread creation failed: Resource temporarily unavailable. The followings is the log file. Could you give me any suggestions? Best wishes! err.txt out.txt

scoutzxb commented 2 years ago

You're setting it to use 1000000 sessions which is too many. You should add an "outputprefix" like below if you wanted the session number to be 1.

CscoreTool1.1 /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/Ma6.bed /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/input.summary outputprefix 1 1000000 Chr1

Xiaobin

On Wed, Mar 23, 2022 at 6:16 AM Aannaw @.***> wrote:

Hello, Professor I am running CscoreTool with the command CscoreTool1.1 /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/Ma6.bed /data/01/user157/fenshu/hic-pro/AB-compartment/CscoreTool/Ma6/input.summary 1 1000000 Chr1. But after running several minutes, the task failed with the err log: libgomp: Thread creation failed: Resource temporarily unavailable. The followings is the log file. Could you give me any suggestions? Best wishes! err.txt https://github.com/scoutzxb/CscoreTool/files/8332026/err.txt out.txt https://github.com/scoutzxb/CscoreTool/files/8332027/out.txt

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Aannaw commented 2 years ago

Oh! It is a silly fault! I will check it again! Thank you very much!

scoutzxb commented 2 years ago

You're welcome!

On Wed, Mar 23, 2022 at 10:45 AM Aannaw @.***> wrote:

Oh! It is a silly fault! I will check it again! Thank you very much!

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