scratcharchive / mountainsort_examples

Examples of using MountainSort spike sorting software.
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any idea? #13

Open elliothsmith opened 6 years ago

elliothsmith commented 6 years ago

Any idea what could be going on here? I can't seem to get this working due to a lot of widget related issues.


Exception Traceback (most recent call last)

in 4 output_dir=output_base_dir+'/ms4' 5 with Pipeline: ----> 6 ms4_sort_dataset(dataset_dir=dsdir,output_dir=output_dir,adjacency_radius=-1,detect_threshold=3) 7 #A=validate_sorting_results(dataset_dir=dsdir,sorting_output_dir=output_dir,output_dir=output_dir) 8 #amplitudes_true=A['amplitudes_true'] ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlproc_impl.py in __exit__(self, type, value, traceback) 33 Global['current_client']=self._client 34 def __exit__(self, type, value, traceback): ---> 35 self._client.run() 36 Global['current_client']=None 37 ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlclient.py in run(self) 195 196 while True: --> 197 ret=self.next_iteration() 198 if not ret: 199 break ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlclient.py in next_iteration(self) 162 except Exception as e: 163 self._stop_everything() --> 164 raise e 165 166 def _stop_everything(self): ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlclient.py in next_iteration(self) 135 str='[Click to expand] Error running process {}: {}'.format(job['processor_name'],job['error']) 136 display(vdom.details(vdom.summary(str),vdom.pre(job['console_output']))) --> 137 raise Exception(str) 138 elif job['status'] == 'finished': 139 num_finished=num_finished+1 Exception: [Click to expand] Error running process ephys.whiten: Process returned with non-zero error code (255)