issues
search
scratcharchive
/
spikeforest-docs
Miscellaneous documentation for projects related to spikeforest
Apache License 2.0
1
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
website copy: describe method for computing snr
#67
magland
opened
5 years ago
0
webpage copy: explanation of calculation of accuracy / precision / recall
#66
magland
opened
5 years ago
0
move from f_n, f_p to num_matches, num_false_neg, num_false_pos
#65
magland
opened
5 years ago
0
move mearec generator script to spikeforest2 and fix bug reported by James
#64
magland
opened
5 years ago
1
streamline spike sorting routines
#63
magland
closed
5 years ago
0
Add toggle with alternate values on primary heatmap (SNR/accuracy/recall/precision)
#62
ghost
opened
5 years ago
1
Document API needs for JM in server-side app
#61
ghost
opened
5 years ago
1
Convert front end to server-side rendering with react-bootstrap
#60
ghost
closed
5 years ago
0
for James: wrap HerdingSpikes2 and run it on all spikeforest groundtruth studysets
#59
jamesjun
opened
5 years ago
1
for James: wrap YASS and run it on all spikeforest groundtruth studysets
#58
jamesjun
opened
5 years ago
0
for James: add simulated MEA dataset (2D arrays) using mearec
#57
jamesjun
opened
5 years ago
1
for James: add manual groundtruth from Buzsaki lab (https://buzsakilab.nyumc.org/datasets/)
#56
jamesjun
opened
5 years ago
0
for James: add paired recording groundtruth from Buzsaki lab (crcns.org)
#55
jamesjun
opened
5 years ago
1
Create false positive / false negative line graphs for each scatterplot point
#54
ghost
closed
5 years ago
1
Create 3-plot spike spray view for each ground truth unit showing false neg, false pos, matching spikes
#53
magland
opened
5 years ago
1
create monitor batches standalone webpage
#52
magland
opened
5 years ago
0
implement batcho listener
#51
magland
opened
5 years ago
0
casuploadserver -- upon uploading file register hint with the kbucket share
#50
magland
opened
5 years ago
0
Accuracy scatter plot to appear on website
#49
magland
opened
5 years ago
0
Discuss next steps for accuracy heatmap
#48
magland
opened
5 years ago
0
for Liz: create per study data
#47
magland
opened
5 years ago
0
contact neuroscientists to give feedback/advice on website
#46
magland
opened
5 years ago
2
make browse_recordings.ipynb
#45
magland
opened
5 years ago
0
Create 2d MEA simulated datasets
#44
magland
opened
5 years ago
0
Compute multiple versions of unit snr -- and option
#43
magland
opened
5 years ago
0
System for browsing batches and viewing which have completed
#42
magland
opened
5 years ago
0
Think about ways that user can download data
#41
magland
opened
5 years ago
0
Think about spider/radar plot for displaying accuracies
#40
magland
opened
5 years ago
0
Describe to Liz how to filter studies, e.g. by electrode type
#39
magland
opened
5 years ago
0
send Liz list of fields other than Accuracy to display (f.n., f.p.)
#38
magland
opened
5 years ago
0
Send Liz blurbs about the website, project, contributors, etc
#37
magland
opened
5 years ago
0
Meta data / tags in the study description
#36
magland
opened
5 years ago
0
for Liz: provide info on which sorters were run on which studies
#35
magland
opened
5 years ago
1
Create full analysis notebook
#34
magland
opened
5 years ago
0
Run sorting on bionet datasets
#33
magland
opened
5 years ago
0
provide additional study set for website
#32
magland
opened
5 years ago
0
Fix sf.kbucketConfig
#31
magland
opened
5 years ago
0
ml_ms4alg -- output_folder argument
#30
magland
opened
5 years ago
0
spikewidgets: improve UnitWaveformWidget as recommended by Alessio:
#29
magland
opened
5 years ago
0
spikewidgets: Cross correlogram widgets
#28
magland
opened
5 years ago
0
improve sorting result json
#27
magland
opened
5 years ago
0
devtool: auto pip check which local packages are development mode and do a git status for each
#26
magland
opened
6 years ago
0
provide descriptions of each sorting algorithm
#25
magland
opened
6 years ago
0
recordings JSON file for website: should include computed info
#24
magland
opened
6 years ago
1
use alessio's simulations of realistic neural waveforms to improve the synthetic recordings
#23
magland
opened
6 years ago
1
Prepare sorters table for Liz
#22
magland
opened
6 years ago
1
kbucketclient -- downloadfile message -- display file size properly (not 0.0 MB)
#21
magland
opened
6 years ago
0
For Liz -- single file to load with all the accuracies -- and other things needed for the website.
#20
magland
opened
6 years ago
0
create jupyter widget for selecting study, recording, sorting result
#19
magland
opened
6 years ago
0
prepare_studies.ipynb: separate loads for each group -- so that we can selectively update particular groups
#18
magland
closed
6 years ago
0
Next