scratcharchive spikeforest-docs issues

scratcharchive / spikeforest-docs

Miscellaneous documentation for projects related to spikeforest

Apache License 2.0

1 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

website copy: describe method for computing snr

#67 magland opened 5 years ago
0
webpage copy: explanation of calculation of accuracy / precision / recall

#66 magland opened 5 years ago
0
move from f_n, f_p to num_matches, num_false_neg, num_false_pos

#65 magland opened 5 years ago
0
move mearec generator script to spikeforest2 and fix bug reported by James

#64 magland opened 5 years ago
1
streamline spike sorting routines

#63 magland closed 5 years ago
0
Add toggle with alternate values on primary heatmap (SNR/accuracy/recall/precision)

#62 ghost opened 5 years ago
1
Document API needs for JM in server-side app

#61 ghost opened 5 years ago
1
Convert front end to server-side rendering with react-bootstrap

#60 ghost closed 5 years ago
0
for James: wrap HerdingSpikes2 and run it on all spikeforest groundtruth studysets

#59 jamesjun opened 5 years ago
1
for James: wrap YASS and run it on all spikeforest groundtruth studysets

#58 jamesjun opened 5 years ago
0
for James: add simulated MEA dataset (2D arrays) using mearec

#57 jamesjun opened 5 years ago
1
for James: add manual groundtruth from Buzsaki lab (https://buzsakilab.nyumc.org/datasets/)

#56 jamesjun opened 5 years ago
0
for James: add paired recording groundtruth from Buzsaki lab (crcns.org)

#55 jamesjun opened 5 years ago
1
Create false positive / false negative line graphs for each scatterplot point

#54 ghost closed 5 years ago
1
Create 3-plot spike spray view for each ground truth unit showing false neg, false pos, matching spikes

#53 magland opened 5 years ago
1
create monitor batches standalone webpage

#52 magland opened 5 years ago
0
implement batcho listener

#51 magland opened 5 years ago
0
casuploadserver -- upon uploading file register hint with the kbucket share

#50 magland opened 5 years ago
0
Accuracy scatter plot to appear on website

#49 magland opened 5 years ago
0
Discuss next steps for accuracy heatmap

#48 magland opened 5 years ago
0
for Liz: create per study data

#47 magland opened 5 years ago
0
contact neuroscientists to give feedback/advice on website

#46 magland opened 5 years ago
2
make browse_recordings.ipynb

#45 magland opened 5 years ago
0
Create 2d MEA simulated datasets

#44 magland opened 5 years ago
0
Compute multiple versions of unit snr -- and option

#43 magland opened 5 years ago
0
System for browsing batches and viewing which have completed

#42 magland opened 5 years ago
0
Think about ways that user can download data

#41 magland opened 5 years ago
0
Think about spider/radar plot for displaying accuracies

#40 magland opened 5 years ago
0
Describe to Liz how to filter studies, e.g. by electrode type

#39 magland opened 5 years ago
0
send Liz list of fields other than Accuracy to display (f.n., f.p.)

#38 magland opened 5 years ago
0
Send Liz blurbs about the website, project, contributors, etc

#37 magland opened 5 years ago
0
Meta data / tags in the study description

#36 magland opened 5 years ago
0
for Liz: provide info on which sorters were run on which studies

#35 magland opened 5 years ago
1
Create full analysis notebook

#34 magland opened 5 years ago
0
Run sorting on bionet datasets

#33 magland opened 5 years ago
0
provide additional study set for website

#32 magland opened 5 years ago
0
Fix sf.kbucketConfig

#31 magland opened 5 years ago
0
ml_ms4alg -- output_folder argument

#30 magland opened 5 years ago
0
spikewidgets: improve UnitWaveformWidget as recommended by Alessio:

#29 magland opened 5 years ago
0
spikewidgets: Cross correlogram widgets

#28 magland opened 5 years ago
0
improve sorting result json

#27 magland opened 5 years ago
0
devtool: auto pip check which local packages are development mode and do a git status for each

#26 magland opened 6 years ago
0
provide descriptions of each sorting algorithm

#25 magland opened 6 years ago
0
recordings JSON file for website: should include computed info

#24 magland opened 6 years ago
1
use alessio's simulations of realistic neural waveforms to improve the synthetic recordings

#23 magland opened 6 years ago
1
Prepare sorters table for Liz

#22 magland opened 6 years ago
1
kbucketclient -- downloadfile message -- display file size properly (not 0.0 MB)

#21 magland opened 6 years ago
0
For Liz -- single file to load with all the accuracies -- and other things needed for the website.

#20 magland opened 6 years ago
0
create jupyter widget for selecting study, recording, sorting result

#19 magland opened 6 years ago
0
prepare_studies.ipynb: separate loads for each group -- so that we can selectively update particular groups

#18 magland closed 6 years ago
0