Closed uzaymacar closed 2 years ago
Latest commit 206d6c6 corresponds to implementing the changes described in this comment of the sister PR for developing super-duper models. Compared to that comment, the changes for the contrast-specific models are:
target_suffix
is _seg-manual
as opposed to _softseg
as in the other PRsplit_dataset:fname_split
we use the .joblib
from the corresponding super-duper training to ensure we are using the same subjects in training/val/test splits.
This PR adds 4 config files for training contrast-specific methods, i.e., models were trained with labels that were generated for each contrast specifically:
seg_sc_all.json
which is trained on T1w, T2*, and T2w contrastsseg_sc_t1w.json
which is trained on T1w contrastseg_sc_t2star
which is trained on T2* contrastseg_sc_t2w
which is trained on T2w contrastAll config files in this PR use the
spine-generic-processed
dataset (version:4d60963478566a472897114d0c53c01cb327c48f
) and thelabels
derivative folder.