Closed sandrinebedard closed 2 years ago
This PR mainly:
data_processed_clean
Only the images that have segmentations and soft segmentations are transfered in data_processed_clean.
git checkout sb/121-move-derivatives
sct_run_batch -jobs -1 -path-data <PATH_DATA> -path-output <PATH-OUTPUT> -script process_data.sh -script-args exclude_reg.yml
An example of the results can be found here: duke:projects/ivadomed/contrast-agnostic-seg/data-multi-subject-test13
duke:projects/ivadomed/contrast-agnostic-seg/data-multi-subject-test13
Context
This PR mainly:
data_processed_clean
in the output folder.Only the images that have segmentations and soft segmentations are transfered in
data_processed_clean
.Procedure to test
git checkout sb/121-move-derivatives
An example of the results can be found here:
duke:projects/ivadomed/contrast-agnostic-seg/data-multi-subject-test13