Closed valosekj closed 1 year ago
Processing finished without errors. Results copied to ~/duke/projects/dcm-normalization/dcm-zurich_2023-08-13_persex
.
The metrics across all subjects are now aggregated in a single CSV file (~/duke/projects/dcm-normalization/dcm-zurich_2023-08-13_persex/results/compression_metrics.csv
). This is a difference from the previous analysis (dcm-zurich_2023-05-17_persex
), where each metric for each subject was saved in a separate CSV file.
A single CSV should be easier to handle in further analyses --> we can simplify the read_MSCC
function in statistics/compute_stats_zurich.py.
@sandrinebedard, if you agree, we can merge the PR.
This PR updates the processing script for
dcm-zurich
to be compatible with recent updates ofsct_compute_compression
.Context:
sct_compute_compression
now outputs both normalized and non-normalized values into a single file; moreover, values from individual subjects are aggregated into a single file; see https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/4003#discussion_r1246007753 and https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/4172TODO:
dcm-zurich
Fixes: https://github.com/sct-pipeline/dcm-metric-normalization/issues/17