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sct-pipeline / dcm-metric-normalization

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Add processing script for `dcm-zurich` #8

Closed valosekj closed 1 year ago

valosekj commented 1 year ago

This PR contains the script for analysis of dcm-zurich dataset.

The analysis consists of the following steps:

  1. T2w sag spinal cord segmentation
  2. T2w sag vertebral labeling
  3. T2w ax spinal cord segmentation
  4. T2w ax vertebral labeling (either using manual disc labels or using sagittal disc labels)
  5. running sct_compute_compression on T2w ax with and without PAM50 normalization
valosekj commented 1 year ago

Since the analysis of the dcm-zurich dataset successfully finished, I guess this PR is ready for review and merge.

@sandrinebedard could you just quickly check if everything looks okay to you?