Add Arnaud's data

[jcohenadad]

See: https://github.com/sct-pipeline/epi-ap-pa-registration/issues/1#issue-1976925734

you need to add to this open access fMRI dataset Arnaud's data, with our manual segmentation

[rohanbanerjee]

Hello @MerveKaptan this dataset also needs to be added in the dataset that we are uploading to OpenNeuro

[MerveKaptan]

Hello @jcohenadad!

@rohanbanerjee brought this to my attention during our meeting today.

Is the dataset here?

From everyone else, we got (and will be uploading)

• mean of motion-corrected 20 EPI volumes
• segmentation based on this
• .json file after dcm2niix (if applicable)

Could you please point out the corresponding files to me?

Also, could you please tell me what the following were, so I can fill in the information?

• the motion-correction procedure
• what the scanner was
• who the contact person for this dataset is
• institution
• coauthors
• acknowledgments

Thank you very much!

[jcohenadad]

@4rnaudB can advise for https://github.com/sct-pipeline/fmri-segmentation/issues/26#issuecomment-2078252367

[4rnaudB]

So there were 3 total datasets shared on this on the epi-ap-pa-registration repo:

• acdc_226 (the data you pointed here here)
• acdc_223 and 224 which were shared directly with Rohan and were then uploaded in this comment

[4rnaudB]

For additional information,

• the motion-correction procedure: Nothing outside the standard sequence was done
• what the scanner was: Siemens 3T Prisma fit
• who the contact person for this dataset is: Julien
• institution: UNF
• coauthors: Alexandre D'Astous, Arnaud Breheret
• acknowledgments