sct-pipeline gm-challenge issues

sct-pipeline / gm-challenge

Spinal cord gray matter imaging challenge

MIT License

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issues

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Negative value(s) in WM segmentation causes fail of snr_single computation in compute_cnr.py

#77 valosekj opened 2 years ago
1
New version of `ptitprince` creates boxplots without alpha

#76 jcohenadad closed 2 years ago
0
Added figure showing monopolar vs. bipolar acquisition

#75 jcohenadad closed 2 years ago
0
Removed old notebook

#74 jcohenadad closed 2 years ago
0
Improved visuals of the qualitative assessment figure

#73 renelabounek closed 2 years ago
2
Update code for simulation by using the new `compute_cnr.py`

#72 jcohenadad closed 2 years ago
0
Create Python package

#71 jcohenadad closed 2 years ago
0
Update code for simulation

#70 jcohenadad closed 2 years ago
0
Create a proper Python package

#69 jcohenadad closed 2 years ago
0
Refactored CNR computation and added CNR per unit time

#68 jcohenadad closed 2 years ago
0
Update qualitative assessment code

#67 renelabounek closed 2 years ago
0
Updated code for simulations

#66 jcohenadad closed 2 years ago
1
Add CNR figure for spine-generic data

#65 jcohenadad closed 2 years ago
1
Code for simulations is no more valid

#64 jcohenadad closed 2 years ago
0
Add qualitative assessment into gm-challenge source codes

#63 renelabounek closed 2 years ago
0
Implement generate_figure_spinegeneric

#62 alexfoias closed 2 years ago
10
Make a figure for the spine-generic dataset

#61 jcohenadad closed 2 years ago
3
Not possible to compute SNR single because background is zero in some data

#60 jcohenadad opened 3 years ago
2
Fixed calculation of contrast

#59 jcohenadad closed 3 years ago
0
Wrong calculation of SNR_single

#58 jcohenadad closed 3 years ago
2
Wrong calculation of contrast

#57 jcohenadad closed 3 years ago
0
Updated code to new BIDS-compliant dataset

#56 jcohenadad closed 3 years ago
0
Update code to accommodate new BIDS data format

#55 jcohenadad closed 3 years ago
0
Fix wrong path when checking the presence of manual labels

#54 jcohenadad closed 3 years ago
0
Add evaluations of data quality by radiologists

#53 jcohenadad closed 2 years ago
12
Figuring out missing/additional datasets

#52 jcohenadad closed 2 years ago
10
Update script to compute statistics and generate figure

#51 jcohenadad closed 2 years ago
1
Retrieve SNR outputs from TXT file once SCT enables it

#50 jcohenadad closed 3 years ago
1
Update script to compute contrast

#49 jcohenadad closed 2 years ago
1
Added arguments on WMGM script

#48 jcohenadad opened 3 years ago
0
Script to output contrast vs flip angle

#47 jcohenadad closed 3 years ago
1
Upload dataseg in git repository

#46 jcohenadad closed 3 years ago
1
Major refactoring for compatibility with SCT v5.3.0

#45 jcohenadad closed 3 years ago
0
Cannot run script using SCT's Python

#44 jcohenadad closed 3 years ago
1
process_folder crashes when launched via Niftyweb submission

#43 jcohenadad opened 5 years ago
0
process_data: Decrease processing time by cropping data before registration

#42 jcohenadad closed 5 years ago
0
Update README.md

#41 Nicolas-Pinon closed 5 years ago
0
Nipin/gm challenge snr plot

#40 Nicolas-Pinon closed 5 years ago
1
Nipin/gm challenge snr plot

#39 Nicolas-Pinon closed 5 years ago
0
Add SNR_single to README and remove sharpness

#38 stephaniealley closed 6 years ago
0
Added method to calculate SNR using a single slice

#37 stephaniealley closed 6 years ago
1
Add method for computing SNR from a single scan

#36 stephaniealley closed 6 years ago
4
update the README

#35 jcohenadad closed 5 years ago
1
Merge jca_process_data into sa_issue9

#34 stephaniealley closed 6 years ago
2
Make code to generate figure of nifti phantom

#33 jcohenadad closed 2 years ago
1
generate figures from phantom data

#32 jcohenadad closed 6 years ago
0
indicate repository version in results report

#31 jcohenadad closed 3 years ago
1
Generate QC report showing segmentation results for all participants

#30 jcohenadad closed 5 years ago
1
Add header to WMGM

#29 stephaniealley closed 6 years ago
3
(WIP) Various fixes and implementations

#28 jcohenadad closed 6 years ago
5