sct-pipeline / ukbiobank-spinalcord-csa

Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.
MIT License
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Add script to compare .yml files for test 1 of manual seg #40

Closed sandrinebedard closed 3 years ago

sandrinebedard commented 3 years ago

Description

This PR addresses the issue #36. For the first test, candidates will generate a .yml file with the images that they identified that need correction. This PR adds a script that compares .yml files generated by the candidates and the reference list. Every .yml file from candidates will be in a folder and the script loops through all files and compares with ref.

Outputs log file and a .csv with the results.

Results are:

Example of output

image (The last table is also saved in a .csv file)

sandrinebedard commented 3 years ago

I had a bit a fun with what to check for the .yml files :speak_no_evil: , we could output less results!