sct-pipeline / ukbiobank-spinalcord-csa

Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.
MIT License
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add sub to exclude from QC: sub-1025351 to sub-1047836 #48

Closed sandrinebedard closed 3 years ago

sandrinebedard commented 3 years ago

Description

This PR adds images to exclude from the analysis from what Olivier observed in QC report from the first 350 subjects of UK Biobank. It refers to subjects from sub-1025351 to sub-1047836.

I looked at all the images and the main issue is for T2w images: shading appears on SC, so we don't see it --> see issue # 45 This problem is identified as # Shading at C2-C3, don't see SC + disc in exclude .yml. (Can be changed if it is unclear)