Since we are now also computing CSA based on the distance from PMJ, we need the PMJ label. sct_detect_pmj can fail, we need to add the option to manually label PMJ to the script manual_correction.py
TODO
[x] Add function to call sct_label_utils -create-viewer 50
[x] Choose a name for derivative: could be: sub-XXX_T1w_pmj-manual.nii.gz .
[x] Update README to add instructions to manually label PMJ.
Context
Since we are now also computing CSA based on the distance from PMJ, we need the PMJ label.
sct_detect_pmjcan fail, we need to add the option to manually label PMJ to the scriptmanual_correction.pyTODO
sct_label_utils -create-viewer 50sub-XXX_T1w_pmj-manual.nii.gz.