Closed yingsun-ucsd closed 2 years ago
I am very new to AnnData and trying to learn by following the tutorials at https://anndata-tutorials.readthedocs.io/en/latest/getting-started.html. Everything works until step [15]. I got the following error message:
adata.write('my_results.h5ad', compression="gzip") !h5ls 'my_results.h5ad' File "", line 1 !h5ls 'my_results.h5ad' ^ SyntaxError: invalid syntax
Any ideas or suggestions? Thanks.
Executing with a prepended ! sends the command to the shell. This is a shell command, not a Python statement.
!
Sorry, my fault. Thanks.
I am very new to AnnData and trying to learn by following the tutorials at https://anndata-tutorials.readthedocs.io/en/latest/getting-started.html. Everything works until step [15]. I got the following error message:
Any ideas or suggestions? Thanks.