Closed flying-sheep closed 4 days ago
All modified and coverable lines are covered by tests :white_check_mark:
Project coverage is 84.44%. Comparing base (
f87f3a8
) to head (9138d94
).
I'm also going to do a fix for that test.
The “use zarr arrays as .X” came in #38, which was a different time for sure. No tests, so I’ll add some
Fixes an unreleased bug introduced in #1516
AnnData’s
StorageType
enum doesn’t containh5py.Dataset
, but in scanpy’s tests we setadata.obsm["thing"] = h5py_file["some_dataset"]
My path unified handling ofAlignedArray
s andX
so now that “anndata dev” test job in Scanpy throws an error.How should we do this with backed?
Dataset
s everywhere without makingAnnData
formallyisbacked
?isbacked
ifX
happens to be aDataset
with the correct path for backed mode?X
specifically toDataset
and throw an error that one should useadata.filename = ...
for that?