I realized one thing: currently, to_Seurat will always write the expression to the assay of 'RNA'. I wonder if devs may add an option so that we can customize the assay the expression to be written to? We often do pure CITE-seq experiments, which means output from that usage should be in the assay of 'ADT'--which means an entire new Seurat object needs to be created to carry on the assay data because the assays' names of Seurat objects cannot be directly modified.
rcannood
commented
4 weeks ago
I realized one thing: currently,
to_Seuratwill always write the expression to the assay of'RNA'. I wonder if devs may add an option so that we can customize the assay the expression to be written to? We often do pure CITE-seq experiments, which means output from that usage should be in the assay of'ADT'--which means an entire newSeuratobject needs to be created to carry on the assay data because the assays' names ofSeuratobjects cannot be directly modified.