Closed ivirshup closed 1 year ago
import genomic_features as gf ensdb = gf.ensembl.annotation(species="Hsapiens", version="108") ensdb # EnsemblDB(organism='Homo sapiens', ensembl_release='108')
Open to changing this up.
This also adds a metadata field for reporting the metadata table:
ensdb.metadata # {'Db type': 'EnsDb', # 'Type of Gene ID': 'Ensembl Gene ID', # 'Supporting package': 'ensembldb', # 'Db created by': 'ensembldb package from Bioconductor', # 'script_version': '0.3.7', # 'Creation time': 'Fri Oct 28 05:24:43 2022', # 'ensembl_version': '108', # 'ensembl_host': 'localhost', # 'Organism': 'Homo sapiens', # 'taxonomy_id': '9606', # 'genome_build': 'GRCh38', # 'DBSCHEMAVERSION': '2.2'}
Open to changing this up.
This also adds a metadata field for reporting the metadata table: