Finalizing names - Githubissues

scverse / genomic-features

Genomic Features in Python from BioConductor's AnnotationHub

https://genomic-features.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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Finalizing names #47

Open ivirshup opened 1 year ago

ivirshup commented 1 year ago

Description of feature

We should finalize naming for things. I'm starting a list here of things to resolve

[ ] GeneRangesFilter -> GeneRangeFilter (since it only takes a single range)
[ ] CanonicalFilter -> ???
[ ] genes(cols=...) -> genes(columns=...) – Just to be more consistent. Could go the other way and use cols everywhere.
[ ] What are the canonical strand names? +, - I assume?

Pushing to next release:

[ ] GeneRangeFilter + TxRangeFilter + ExonFilter or all one RangeFilter as done in bioconductor?
[ ] gf.ensembl.annotation Do we still want to call this an annotation? I named the function when the package was called genomic-annotations