Add support for AnnData 0.10.0

scverse / mudata

Multimodal Data (.h5mu) implementation for Python

https://mudata.rtfd.io

BSD 3-Clause "New" or "Revised" License

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Add support for AnnData 0.10.0 #59

Closed martinkim0 closed 1 year ago

martinkim0 commented 1 year ago

Is your feature request related to a problem? Please describe. The release candidate for AnnData 0.10.0 is out now - it would be great if the changes could be tested out here since we're looking to add support for it too in scvi-tools.

Describe the solution you'd like Known bugs:

mudata._core.io._read_h5mu_mod should not pass in dtype to AnnData.__init__

gtca commented 1 year ago

Hey Martin,

There's https://github.com/scverse/mudata/pull/53 that implements this as part of the 0.3 release. That's the next planned release, which also comes with many other changes. That should be alright especially considering the dtype change will probably not land in 0.10 after all (https://github.com/scverse/anndata/issues/1137).

Does that sound reasonable to you?

martinkim0 commented 1 year ago

Ah got it, was not aware of that! Sounds good