Open zhouzhendiao opened 11 months ago
This seems like a potential HDF5 limitation rather than a bug that we can fix. Moreover, serialisation is anndata's concern so this should be propagated to a corresponding issue there in case we realise we can do something about it.
Generally, problems like this shouldn't arise in practice... How big is weighted
and how can we reproduce this issue?..
Describe the bug
mdata
System scanpy==1.9.3 anndata==0.9.1 umap==0.5.3 numpy==1.23.5 scipy==1.10.1 pandas==2.0.1 scikit-learn==1.2.2 statsmodels==0.14.0 python-igraph==0.10.4 pynndescent==0.5.10