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scverse / muon

muon is a multimodal omics Python framework
https://muon.scverse.org/
BSD 3-Clause "New" or "Revised" License
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Any plan to add footprints module for ATAC-seq? #90

Open lzj1769 opened 1 year ago

lzj1769 commented 1 year ago

Hi,

Is there a plan to add a footprinting analysis module in atac so that it can visualize TF footprints like Signac and ArchR?

I am pretty interested in muon and it could be an alternative tool for analyzing scATAC-seq in python.

gtca commented 1 year ago

Thanks for this question, @lzj1769, footprinting is on our roadmap!