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scverse / pytometry

Flow & mass cytometry analytics.
https://pytometry.readthedocs.io/en/latest/index.html
Apache License 2.0
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Implement FlowSOM type of clustering #46

Closed mbuttner closed 1 year ago

mbuttner commented 1 year ago

A popular clustering algorithm for flow cytometry data is FlowSOM. Pytometry currently only provides the scanpy clustering algorithms louvain and leiden clustering. A flowSOM type of clustering would enhance the tool.

burtonrj commented 1 year ago

Pinning this here for reference: https://github.com/burtonrj/CytoCluster/blob/main/cytocluster/methods/flowsom.py

Will make a PR once implemented.

burtonrj commented 1 year ago

As part of this work I'll also be implementing consensus clustering, as it is required for FlowSOM - for reference: https://link.springer.com/content/pdf/10.1023/A:1023949509487.pdf