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scverse / pytometry

Flow & mass cytometry analytics.
https://pytometry.readthedocs.io/en/latest/index.html
Apache License 2.0
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Extend to phenograph #49

Open mbuttner opened 1 year ago

mbuttner commented 1 year ago

Phenograph offers a number of different functions designed for cytometry data, such as clustering and batch correction in Python. A wrapper for Phenograph functions would complement the pytometry package.

burtonrj commented 1 year ago

There is also PARC clustering which is a slightly optimised version of phonograph: https://academic.oup.com/bioinformatics/article/36/9/2778/5714737

I ported it here in cytocluster: https://github.com/burtonrj/CytoCluster/blob/main/cytocluster/methods/parc.py

Phenograph should be priority but maybe afterwards its worth thinking about PARC

mbuttner commented 1 year ago

Thanks for bringing this up! I agree that Phenograph should be prioritized.