Open mbuttner opened 10 months ago
A couple points from the discussion in https://github.com/scverse/governance/issues/64:
readfcs
. adata = readfcs.read("sample.fcs", backend="fcsparser")
adata = readfcs.read("sample.fcs", backend="flowio")
readfcs.write(adata, "sample.fcs", backend="flowio")
pip install flowio[anndata]
adata = flowio.FlowData('sample.fcs').to_anndata()
Pytometry should include a function to export an anndata file to
fcs
using the Gating ML 2.0 version and FCS standard 3.*