Leiden clustering yielding too many clusters

scverse / rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

https://rapids-singlecell.readthedocs.io/

MIT License

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Leiden clustering yielding too many clusters #286

Open Zach-Sten opened 2 weeks ago

Zach-Sten commented 2 weeks ago

I saw this was previously noted but leiden clustering using rsc.tl.leiden still yields too many clusters using rapids 24.08. Is there a better solution than downgrading to 23.04?

Intron7 commented 2 weeks ago

We are still investigating this issue. We still don't have a reproducer to find the course

beckernick commented 2 weeks ago

This should hopefully be resolved in the RAPIDS cuGraph v24.12 nightlies, if you'd like to install one of the nightly packages and test.