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scverse / scanpy-tutorials

Scanpy Tutorials.
https://scanpy-tutorials.readthedocs.io/
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advanced plotting #61

Closed Hrovatin closed 1 year ago

Hrovatin commented 1 year ago

Advanced plotting tutorial

Note: Contains matplotlib specific functions/objects and some external packages (outside of Scanpy)

Closes https://github.com/scverse/scverse-tutorials/issues/25

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review-notebook-app[bot] commented 1 year ago

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namsaraeva commented on 2022-12-09T14:49:38Z ----------------------------------------------------------------

continuous*

multiple*


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namsaraeva commented on 2022-12-09T14:49:39Z ----------------------------------------------------------------

Line #14.    print('\nContinuous plots:')


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Zethson commented on 2023-02-21T12:27:19Z ----------------------------------------------------------------

Line #1.    # Load PBMC dataset

Think we can remove this comment. You can add a comment about the dataset though.


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Zethson commented on 2023-02-21T12:27:20Z ----------------------------------------------------------------

This section provides general information on how to customize plots.

That's what the title of the section already says. I'd replace this sentence with the goal of this section or so.

in trun

in turn


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Zethson commented on 2023-02-21T12:27:21Z ----------------------------------------------------------------

You can also use markdown notes to render this nicely if you want to. 

> **_NOTE:_**  The note content.


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Zethson commented on 2023-02-21T12:27:22Z ----------------------------------------------------------------

IMO you also need to mention scanpy's setting here which is a wrapper of the rcParams


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Zethson commented on 2023-02-21T12:27:23Z ----------------------------------------------------------------

You're looking for the Python language concept "contextmanager". I'd use it here.


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Zethson commented on 2023-02-21T12:27:24Z ----------------------------------------------------------------

Line #1.    # Compute PAGA

You can remove this I guess


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